View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0096_low_13 (Length: 284)
Name: NF0096_low_13
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 17232874 - 17233089
Alignment:
| Q |
52 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgttnnnnnnnt----taca |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17232874 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtaca |
17232973 |
T |
|
| Q |
148 |
c----agcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccg |
243 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17232974 |
ctatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccg |
17233073 |
T |
|
| Q |
244 |
acactcctatgatact |
259 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17233074 |
acactcctatgatact |
17233089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 32676409 - 32676441
Alignment:
| Q |
223 |
ctaggtgtgccgccgtgtccgacactcctatga |
255 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatga |
32676441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1331 times since January 2019
Visitors: 1298