View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0096_low_18 (Length: 251)

Name: NF0096_low_18
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0096_low_18
NF0096_low_18
[»] chr8 (28 HSPs)
chr8 (59-240)||(43211916-43212097)
chr8 (59-240)||(5303702-5303883)
chr8 (59-240)||(43188460-43188641)
chr8 (59-240)||(39938697-39938878)
chr8 (59-240)||(15036209-15036390)
chr8 (77-240)||(39846485-39846648)
chr8 (59-240)||(34822497-34822679)
chr8 (72-240)||(489124-489291)
chr8 (59-240)||(39252422-39252594)
chr8 (59-212)||(45064670-45064822)
chr8 (110-240)||(39602126-39602256)
chr8 (59-240)||(40076740-40076912)
chr8 (72-240)||(42485024-42485200)
chr8 (92-237)||(2984536-2984681)
chr8 (59-187)||(41249570-41249698)
chr8 (144-240)||(37327194-37327290)
chr8 (134-238)||(35552078-35552182)
chr8 (134-238)||(20857698-20857802)
chr8 (146-237)||(25095-25186)
chr8 (146-237)||(1052938-1053029)
chr8 (146-237)||(23021889-23021980)
chr8 (146-237)||(26659860-26659951)
chr8 (134-237)||(34371450-34371553)
chr8 (134-240)||(24249893-24249999)
chr8 (139-230)||(45128170-45128261)
chr8 (134-230)||(5677491-5677587)
chr8 (149-237)||(22495331-22495419)
chr8 (205-240)||(41249700-41249735)
[»] chr7 (28 HSPs)
chr7 (59-240)||(17835487-17835668)
chr7 (59-240)||(27453100-27453281)
chr7 (59-240)||(47776745-47776926)
chr7 (59-240)||(39460939-39461120)
chr7 (82-240)||(10517391-10517549)
chr7 (59-240)||(36978009-36978190)
chr7 (59-240)||(47672566-47672747)
chr7 (72-240)||(15073723-15073890)
chr7 (72-240)||(42507522-42507689)
chr7 (59-240)||(9494277-9494457)
chr7 (59-240)||(34738777-34738958)
chr7 (59-240)||(37340715-37340896)
chr7 (73-237)||(14689553-14689717)
chr7 (134-230)||(5541096-5541192)
chr7 (146-237)||(35609984-35610075)
chr7 (146-237)||(41880904-41880995)
chr7 (146-237)||(45257401-45257492)
chr7 (144-240)||(556212-556308)
chr7 (134-230)||(16675207-16675303)
chr7 (134-230)||(17649575-17649671)
chr7 (149-240)||(17741019-17741110)
chr7 (146-237)||(48403771-48403862)
chr7 (146-238)||(46740115-46740207)
chr7 (146-216)||(9370958-9371028)
chr7 (186-237)||(17465329-17465380)
chr7 (186-237)||(17587834-17587885)
chr7 (146-183)||(17462862-17462899)
chr7 (146-183)||(17590315-17590352)
[»] chr2 (23 HSPs)
chr2 (59-238)||(39948013-39948192)
chr2 (59-240)||(45429002-45429182)
chr2 (59-240)||(28469052-28469232)
chr2 (59-240)||(32955840-32956016)
chr2 (72-240)||(17420978-17421145)
chr2 (59-240)||(45136784-45136954)
chr2 (103-240)||(21998601-21998737)
chr2 (59-182)||(22686849-22686970)
chr2 (134-238)||(29401160-29401264)
chr2 (134-231)||(25515366-25515463)
chr2 (134-230)||(10828581-10828677)
chr2 (146-238)||(20938309-20938401)
chr2 (134-238)||(36655906-36656010)
chr2 (146-237)||(3940297-3940388)
chr2 (146-237)||(5352379-5352470)
chr2 (146-237)||(30496515-30496606)
chr2 (146-237)||(43978934-43979025)
chr2 (148-238)||(45284585-45284675)
chr2 (148-238)||(45291948-45292038)
chr2 (163-240)||(25965231-25965308)
chr2 (146-237)||(15831542-15831633)
chr2 (146-237)||(43539306-43539397)
chr2 (199-240)||(7185440-7185481)
[»] chr3 (39 HSPs)
chr3 (59-240)||(42165573-42165754)
chr3 (59-240)||(3976117-3976298)
chr3 (59-240)||(47073688-47073869)
chr3 (59-240)||(44230124-44230305)
chr3 (59-240)||(4007804-4007985)
chr3 (59-240)||(50963365-50963545)
chr3 (59-240)||(30255483-30255664)
chr3 (59-240)||(48563338-48563519)
chr3 (59-240)||(42756564-42756743)
chr3 (59-240)||(20917496-20917679)
chr3 (59-240)||(20926458-20926641)
chr3 (59-240)||(49195928-49196109)
chr3 (59-240)||(42805742-42805924)
chr3 (98-240)||(50216398-50216540)
chr3 (59-240)||(48889154-48889326)
chr3 (132-238)||(17567618-17567724)
chr3 (134-238)||(16611490-16611594)
chr3 (134-238)||(22047659-22047763)
chr3 (134-238)||(41612780-41612884)
chr3 (146-237)||(52390964-52391055)
chr3 (144-238)||(597171-597265)
chr3 (163-240)||(3501477-3501554)
chr3 (146-238)||(2274482-2274574)
chr3 (146-237)||(29009273-29009364)
chr3 (146-237)||(42903758-42903849)
chr3 (146-237)||(46389375-46389466)
chr3 (146-237)||(50480352-50480443)
chr3 (146-237)||(54386537-54386628)
chr3 (134-231)||(20351063-20351161)
chr3 (146-237)||(49144031-49144121)
chr3 (146-223)||(46701593-46701670)
chr3 (134-238)||(36127849-36127953)
chr3 (146-237)||(34045790-34045880)
chr3 (149-232)||(4178222-4178305)
chr3 (149-237)||(31045165-31045253)
chr3 (149-232)||(4172224-4172307)
chr3 (59-112)||(54681976-54682029)
chr3 (207-240)||(51807380-51807413)
chr3 (59-92)||(49268749-49268782)
[»] chr1 (32 HSPs)
chr1 (60-240)||(31783210-31783390)
chr1 (59-240)||(35258354-35258535)
chr1 (59-240)||(45825287-45825469)
chr1 (59-240)||(23275585-23275765)
chr1 (59-240)||(51321125-51321305)
chr1 (60-237)||(52802545-52802722)
chr1 (72-240)||(19925153-19925320)
chr1 (72-240)||(30890472-30890639)
chr1 (59-236)||(19527024-19527201)
chr1 (59-240)||(47502726-47502895)
chr1 (93-240)||(49857461-49857605)
chr1 (134-238)||(50343525-50343629)
chr1 (134-235)||(21141443-21141544)
chr1 (134-237)||(2424924-2425025)
chr1 (148-223)||(22524561-22524636)
chr1 (146-238)||(2365649-2365741)
chr1 (146-238)||(19156428-19156520)
chr1 (150-238)||(47656283-47656371)
chr1 (146-237)||(3731949-3732040)
chr1 (146-237)||(13639591-13639682)
chr1 (146-237)||(26876071-26876162)
chr1 (134-235)||(97504-97605)
chr1 (144-237)||(38127048-38127141)
chr1 (149-240)||(17514267-17514358)
chr1 (59-108)||(19526837-19526886)
chr1 (177-237)||(8474199-8474259)
chr1 (66-108)||(19524674-19524716)
chr1 (66-108)||(19524861-19524903)
chr1 (66-108)||(19525522-19525564)
chr1 (66-108)||(19526657-19526699)
chr1 (150-224)||(25166976-25167050)
chr1 (163-222)||(16243106-16243165)
[»] chr6 (13 HSPs)
chr6 (59-238)||(31769118-31769297)
chr6 (59-240)||(6320044-6320225)
chr6 (59-240)||(24088263-24088444)
chr6 (134-238)||(24722341-24722445)
chr6 (134-235)||(26423413-26423514)
chr6 (146-237)||(6201562-6201653)
chr6 (146-237)||(11688529-11688620)
chr6 (149-240)||(21601015-21601106)
chr6 (146-237)||(22301594-22301685)
chr6 (146-237)||(30829220-30829311)
chr6 (134-235)||(3501585-3501686)
chr6 (146-230)||(27617136-27617220)
chr6 (110-240)||(3381195-3381313)
[»] scaffold0180 (1 HSPs)
scaffold0180 (59-240)||(15103-15285)
[»] chr4 (37 HSPs)
chr4 (59-240)||(21022370-21022550)
chr4 (59-240)||(51683613-51683794)
chr4 (59-240)||(50275145-50275326)
chr4 (59-240)||(48256052-48256233)
chr4 (60-240)||(50901891-50902070)
chr4 (59-240)||(40357762-40357942)
chr4 (59-240)||(55407268-55407449)
chr4 (72-240)||(1089079-1089246)
chr4 (59-240)||(37021559-37021745)
chr4 (72-240)||(1308609-1308776)
chr4 (72-240)||(30726236-30726403)
chr4 (92-240)||(11050037-11050185)
chr4 (92-240)||(21537975-21538114)
chr4 (144-240)||(46436655-46436751)
chr4 (134-238)||(50023099-50023203)
chr4 (110-240)||(14315795-14315925)
chr4 (144-240)||(68002-68098)
chr4 (134-238)||(50030217-50030321)
chr4 (146-240)||(41798563-41798657)
chr4 (146-238)||(9892836-9892928)
chr4 (134-226)||(10752983-10753075)
chr4 (134-226)||(10966752-10966844)
chr4 (146-237)||(6181358-6181449)
chr4 (146-237)||(49090834-49090925)
chr4 (144-238)||(30704436-30704530)
chr4 (145-237)||(50193893-50193985)
chr4 (146-237)||(49165447-49165538)
chr4 (134-240)||(14297546-14297652)
chr4 (134-231)||(41933179-41933276)
chr4 (146-237)||(31422111-31422203)
chr4 (144-238)||(44679641-44679735)
chr4 (134-235)||(3184372-3184473)
chr4 (134-235)||(3185440-3185541)
chr4 (134-235)||(3185648-3185749)
chr4 (134-240)||(11083562-11083668)
chr4 (149-237)||(4719949-4720037)
chr4 (59-101)||(68070-68112)
[»] chr5 (18 HSPs)
chr5 (59-240)||(7757735-7757916)
chr5 (59-240)||(42941968-42942148)
chr5 (66-240)||(8579994-8580167)
chr5 (59-240)||(17658733-17658914)
chr5 (59-240)||(28877054-28877234)
chr5 (59-240)||(38968509-38968690)
chr5 (59-240)||(42537560-42537741)
chr5 (60-240)||(19228154-19228334)
chr5 (59-240)||(8701705-8701886)
chr5 (72-240)||(28241294-28241461)
chr5 (59-240)||(512253-512434)
chr5 (149-240)||(14260-14351)
chr5 (134-238)||(5197386-5197490)
chr5 (148-240)||(40624484-40624576)
chr5 (146-240)||(19040685-19040779)
chr5 (137-240)||(20422360-20422463)
chr5 (149-238)||(27673224-27673313)
chr5 (146-238)||(30705549-30705641)
[»] scaffold0293 (1 HSPs)
scaffold0293 (82-240)||(233-390)
[»] scaffold0634 (2 HSPs)
scaffold0634 (144-240)||(7829-7925)
scaffold0634 (66-99)||(7899-7932)
[»] scaffold0238 (1 HSPs)
scaffold0238 (134-238)||(18489-18593)
[»] scaffold0155 (2 HSPs)
scaffold0155 (144-240)||(10765-10861)
scaffold0155 (59-101)||(10833-10875)
[»] scaffold0877 (1 HSPs)
scaffold0877 (134-238)||(4210-4314)
[»] scaffold0007 (1 HSPs)
scaffold0007 (177-225)||(246180-246228)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 43212097 - 43211916
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43212097 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 43211998  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43211997 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 43211916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 5303702 - 5303883
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  5303702 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 5303801  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5303802 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 5303883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 43188641 - 43188460
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  43188641 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttatatcatttccataacataaactaact 43188542  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  43188541 aaataatcaataaaattgtcattgaaacattttatcaaacactttgtatgcaaagtataaaacatattcaaatcgtgttcat 43188460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 39938697 - 39938878
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  39938697 catcataattctcgtaacctacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaact 39938796  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    | |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  39938797 acataatcaataaaattgtcattgagacattttatcaaatactttgtgtgcaaagtataaaacttattcaaattgtgttcat 39938878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 15036209 - 15036390
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaaca-tcatttatatcatttccttaacctaaactaac 157  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||| |||| |||||||||    
T  15036209 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaaccctaatttctatcatttccataac-taaactaac 15036307  T
Q  158 taaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15036308 taaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 15036390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 39846485 - 39846648
Alignment:
Q  77 ctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  39846485 ctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaactaaataatcaataaaattg 39846584  T
Q  177 tcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39846585 tcatggagacagtttatcaaacactttgtgtacaaagtataaaacatattcaaattgtgttcat 39846648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 34822497 - 34822679
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaa-aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaac 157  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  34822497 catcataattctcataacctaaactaactaaaaaaatcaatatacacttaaccaaactataattaatatcatttctatcatttccataacctaaactaac 34822596  T
Q  158 taaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34822597 taaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcagagtataaaacatatttaaattgtgttcat 34822679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 489124 - 489291
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  489124 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 489222  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  489223 aattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatatttaaattgtgttcat 489291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 39252594 - 39252422
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         || |||||||||||||||    
T  39252594 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttgaccaaactataattaacatcattt---------ccataacctaaactaact 39252504  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39252503 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtattcat 39252422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 45064822 - 45064670
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  45064822 catcataattctcctaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataa-ctaaactaact 45064724  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaa 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45064723 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaa 45064670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 39602256 - 39602126
Alignment:
Q  110 caaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 209  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39602256 caaaatataattaacatcatttctatcatttccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 39602157  T
Q  210 aaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||    
T  39602156 aaagtataaaacatattcaaattgtgttcat 39602126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 40076740 - 40076912
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |         ||||||||||||||    
T  40076740 catcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattatcatcatttctgt---------aacctaaactaact 40076830  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40076831 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaattataaaacatattcaaattgtgttcat 40076912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 42485024 - 42485200
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttc---------cttaacctaaactaactaaat 162  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||         | |||| ||||||||||||||    
T  42485024 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttctatcatttccataac-taaactaactaaat 42485122  T
Q  163 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42485123 aatcaataaaattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 42485200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 2984681 - 2984536
Alignment:
Q  92 aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcatttt 191  Q
    ||||||||||||||| | ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  2984681 aatcaatatacactttatcaaactataattaacatcattttcatcatttccataacctaaactaactaaataatcaatataattgtcgttgaggcatttt 2984582  T
Q  192 atcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  2984581 atcaaacactttgtgtgcaaagtatgaaacttattcaaattgtgtt 2984536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 41249570 - 41249698
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  41249570 catcataattctcgtaacctacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaact 41249669  T
Q  159 aaataatcaataaaattgtcattgaggca 187  Q
    | |||||||||||||||||||||| ||||    
T  41249670 acataatcaataaaattgtcattgcggca 41249698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 37327290 - 37327194
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37327290 taacctaaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 37327194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 35552182 - 35552078
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  35552182 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 35552083  T
Q  234 tgttc 238  Q
    |||||    
T  35552082 tgttc 35552078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 20857802 - 20857698
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||    
T  20857802 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacaatttgtgtgcaaagtatcaaacatactcaaaatg 20857703  T
Q  234 tgttc 238  Q
    |||||    
T  20857702 tgttc 20857698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 25095 - 25186
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  25095 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 25186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 1053029 - 1052938
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  1053029 acctaaactaactaaataatcaataaaattgtcattgatacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 1052938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 23021889 - 23021980
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  23021889 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 23021980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 26659951 - 26659860
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  26659951 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 26659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 34371450 - 34371553
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  34371450 atcatatccataacctaaactaactaaataatcaaaaaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 34371549  T
Q  234 tgtt 237  Q
    ||||    
T  34371550 tgtt 34371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 24249999 - 24249893
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||||||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||||| ||||| |||||||||||| ||||||||||||| ||    
T  24249999 atcatttccataacctaaactgactaaataatcaatataattctcattggggcattttatcaaatactttatgtgcaaagtatcaaacatattcaaaatg 24249900  T
Q  234 tgttcat 240  Q
    || ||||    
T  24249899 tgctcat 24249893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 45128261 - 45128170
Alignment:
Q  139 ttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    |||| ||||||||||||||| ||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  45128261 ttccataacctaaactaactcaataatcaatacaattcacattggggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaa 45128170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 5677587 - 5677491
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||||||| ||||||||||| |||  |||||||||| |||| |||||| |||||||||||||||||||| ||||||||  || ||||||| |||||    
T  5677587 atcatttccataacctaaacttactcgataatcaatataattttcattggggcattttatcaaacactttctgtgcaaaacatcaaacatactcaaa 5677491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 22495419 - 22495331
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    |||||||| ||||||||||||  |||| |||||  |||||||||||||| |   | |||||||||||| ||||||||||  ||||||||    
T  22495419 taaactaagtaaataatcaatgcaattttcatttgggcattttatcaaaaaacatttgtgcaaagtatcaaacatattctcattgtgtt 22495331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 41249700 - 41249735
Alignment:
Q  205 tgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41249700 tgtgcaaagtataaagcatattcaaattgtgttcat 41249735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 17835668 - 17835487
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17835668 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaact 17835569  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17835568 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 17835487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 27453100 - 27453281
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||    
T  27453100 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactgact 27453199  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27453200 aaataatcaataaaattgtcaatgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 27453281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 47776926 - 47776745
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  47776926 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccagactataattaacatcatttctatcatttccataacctaaactaact 47776827  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47776826 aaataatcaataaatttgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 47776745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 39461120 - 39460939
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||    
T  39461120 catcataattcttgtaacctaaactaactaaaacatcaatatacacttaaccaaactataattaacatcatttctaccatatccataacctaaactaact 39461021  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39461020 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 39460939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 10517549 - 10517391
Alignment:
Q  82 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcatt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10517549 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaactaaataatcaataaaattgtcatt 10517450  T
Q  182 gaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10517449 gagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 10517391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 36978190 - 36978009
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  36978190 catcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 36978091  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36978090 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcat 36978009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 47672566 - 47672747
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  47672566 catcataattctcataacctaaactaactagaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaact 47672665  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47672666 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 47672747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 15073723 - 15073890
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  15073723 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 15073821  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15073822 aattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 15073890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 42507522 - 42507689
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  42507522 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 42507620  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42507621 aattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 42507689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 9494277 - 9494457
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||    
T  9494277 catcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatt-ccataacctaaactaact 9494375  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9494376 aaataatcaatataattttcattgacgcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 9494457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 34738958 - 34738777
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  34738958 catcataattctcgtaacttacactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaact 34738859  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    | |||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34738858 acataatcaataaaattgtcatcgagacattttatcaaacactttgtgagcaaagcataaaacatattcaaattgtgttcat 34738777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 37340896 - 37340715
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  37340896 catcataattctcataacctaaactaactaacaaattaatatactcttaaccaaactataattaacagcatttctatcatttccataacctaaactaact 37340797  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37340796 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 37340715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 14689553 - 14689717
Alignment:
Q  73 taacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaa 172  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |    
T  14689553 taacataaactaactaaataatcaatatacacttaaccaaacaataattaacatcatttttatcatttccataacataaactaactaaataatcaatata 14689652  T
Q  173 attgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  14689653 attttcattgaggcatttgatcaaacactttgtatgcaaagtataaaagatattcaaattgtgtt 14689717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 5541096 - 5541192
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  5541096 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacaatttgtgtgcaaagtatcaaacatactcaaa 5541192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 35609984 - 35610075
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  35609984 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 35610075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 41880995 - 41880904
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  41880995 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 41880904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 45257492 - 45257401
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  45257492 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 45257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 556212 - 556308
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| | |||||||    
T  556212 taacataaactaactaaataataaataaaattgtcattgaggcattttatcaaacactttgtatgcaaagtatcaaacatactcaaaatatgttcat 556308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 16675303 - 16675207
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||    
T  16675303 atcatatccataacctaaactaacaaaataatcaataaaattgtcattgagacattttattaaacactttgtgtgcaaagtatcaaacatactcaaa 16675207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 17649671 - 17649575
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||    
T  17649671 atcatatccataacctaaactaacaaaataatcaataaaattgtcattgagacattttattaaacactttgtgtgcaaagtatcaaacatactcaaa 17649575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 17741019 - 17741110
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||| |||| |||||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17741019 taaactaactaaataatcaatataattctcatttgggaattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgttcat 17741110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 48403862 - 48403771
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  48403862 acctaaactaactaaataatcaataaaattatcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 48403771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 46740115 - 46740207
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||    
T  46740115 acctaaactaattaaataatcaataaaattgtcattgacacattttatcaatcactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 46740207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 9370958 - 9371028
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtat 216  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  9370958 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtat 9371028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 17465329 - 17465380
Alignment:
Q  186 cattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  17465329 cattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 17465380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 17587885 - 17587834
Alignment:
Q  186 cattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  17587885 cattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 17587834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 17462862 - 17462899
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattga 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17462862 acctaaactaactaaataatcaataaaattgtcattga 17462899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 17590352 - 17590315
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattga 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17590352 acctaaactaactaaataatcaataaaattgtcattga 17590315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 39948192 - 39948013
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39948192 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaact 39948093  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39948092 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 39948013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 45429182 - 45429002
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  45429182 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataac-taaactaact 45429084  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45429083 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 45429002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28469232 - 28469052
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  28469232 catcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-taaactaact 28469134  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28469133 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 28469052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 32955840 - 32956016
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  32955840 catcataattctcgtaacctaaactaactaaaaaatcaatatacactta-ccaaactataattaacatcatttctatcatttccataacctaaactaact 32955938  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32955939 aaataatcaa----attgtcattgaggcattttatcaaacactttgcgtgcaaagtataaaacatattcaaattgtgttcat 32956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 17421145 - 17420978
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  17421145 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 17421047  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  17421046 aattgtcattgagacattttatcaaacacttgatgtgcaaagtataaaacatattcaaattgtgttcat 17420978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 45136784 - 45136954
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||       
T  45136784 catcataattctcgtaacctaaactaactaaaaaatcaatatacatttaaccaaactataattaacatcatttctatcatttccataacctaaacta--- 45136880  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  45136881 --------aataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatatttaaattgtgttcat 45136954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 21998737 - 21998601
Alignment:
Q  103 acttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactt 202  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21998737 acttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataaaattgtcattgagacattttatcaaacactt 21998639  T
Q  203 tgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21998638 tgtgtgcaaagtataaaacatattcaaattgtgttcat 21998601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 22686970 - 22686849
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  22686970 catcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctaccatttccataa-ctaaactaact 22686872  T
Q  159 aaataatcaataaaattgtcattg 182  Q
    ||||||||| | ||||||||||||    
T  22686871 aaataatcact-aaattgtcattg 22686849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 29401160 - 29401264
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  29401160 atcatatccataagctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 29401259  T
Q  234 tgttc 238  Q
    |||||    
T  29401260 tgttc 29401264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 25515366 - 25515463
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaat 231  Q
    ||||||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  25515366 atcatttccataacctaaactaactcaataatcaatataattctcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaat 25515463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 10828581 - 10828677
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||    
T  10828581 atcatatccataacctaaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtccaaagtatcaaacatactcaaa 10828677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 20938401 - 20938309
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  20938401 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 20938309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 36655906 - 36656010
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  36655906 atcatatccataacctaaactaactaaataatcaataaaatgttcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 36656005  T
Q  234 tgttc 238  Q
    |||||    
T  36656006 tgttc 36656010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 3940297 - 3940388
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  3940297 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 3940388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 5352470 - 5352379
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  5352470 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 5352379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 30496515 - 30496606
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  30496515 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 30496606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 43979025 - 43978934
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  43979025 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 43978934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 45284675 - 45284585
Alignment:
Q  148 ctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||||    
T  45284675 ctaaactaactaaataatcaataaaattgtcattgagccattttatcaaacactttgtgtgcaaagtatcaaacatacttaaaatgtgttc 45284585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 45292038 - 45291948
Alignment:
Q  148 ctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||||    
T  45292038 ctaaactaactaaataatcaataaaattgtcattgagccattttatcaaacactttgtgtgcaaagtatcaaacatacttaaaatgtgttc 45291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 25965308 - 25965231
Alignment:
Q  163 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25965308 aatcaataaaattatcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 25965231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 15831633 - 15831542
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  15831633 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaagactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 15831542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 43539306 - 43539397
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||| ||||||| ||||| ||||||    
T  43539306 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaaaacattgtgtgcaaagtatcaaacatactcaaaatgtgtt 43539397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 7185481 - 7185440
Alignment:
Q  199 actttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7185481 actttgtgtgcaaagtataaaacatattcaaattgtgttcat 7185440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 42165754 - 42165573
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42165754 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaact 42165655  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42165654 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatattcaaattgtgttcat 42165573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 3976298 - 3976117
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  3976298 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcctttatatcatttccataacctaaactaact 3976199  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3976198 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 3976117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 47073688 - 47073869
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  47073688 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 47073787  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47073788 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaatatattcaaattgtgttcat 47073869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 44230305 - 44230124
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  44230305 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaaccaact 44230206  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44230205 aaataatcaataaaattgtcattgaggcattttatcaaacacattgtgtgcaaagtataaaacatattcaaattgtgttcat 44230124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 4007804 - 4007985
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  4007804 catcataattcttgtaacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcctttatatcatttccataacctaaactaact 4007903  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4007904 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 4007985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 50963545 - 50963365
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  50963545 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactata-ttaacatcatttatatcatttccataacctaaactaact 50963447  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50963446 aaataatttataaaattgtcactgaggcattttatcaaacactttgtgtgtaaagtataaaacatattcaaattgtgttcat 50963365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 30255483 - 30255664
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  30255483 catcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccttaacctgaactaact 30255582  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30255583 aaataatcaatataaatttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 30255664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 48563519 - 48563338
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  48563519 catcataattcttgtaatctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 48563420  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48563419 aaataatcaatataattttcattgaggcatttgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcat 48563338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 42756743 - 42756564
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42756743 catcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaact 42756644  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42756643 aaataatcaat--aattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 42756564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 20917496 - 20917679
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacac--ttaaccaaactataattaacatcatttatatcatttccttaacctaaactaa 156  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||| |||| ||||||||    
T  20917496 catcataattctcgtaacctaaactaactaaaaaatcaatatacacacttaaccaaactataattaacatcatttcaatcatttccataacttaaactaa 20917595  T
Q  157 ctaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20917596 ctaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 20917679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 20926458 - 20926641
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacac--ttaaccaaactataattaacatcatttatatcatttccttaacctaaactaa 156  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||| |||| ||||||||    
T  20926458 catcataattctcgtaacctaaactaactaaaaaatcaatatacacacttaaccaaactataattaacatcatttcaatcatttccataacttaaactaa 20926557  T
Q  157 ctaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20926558 ctaaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 20926641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 49195928 - 49196109
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||||||    
T  49195928 catcataattcttgtaagctaaactaactaaaaaatcaatatacaattaaccaaactataattaacatcatttctatcattttcataacctaaactaact 49196027  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49196028 aaataatcaatataattttcattgaagcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 49196109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 42805742 - 42805924
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaa-aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaac 157  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  42805742 catcataattctcataacctaaactaactaaaaaaatcaatatacacctaatcaaactataattaacatcatttctatcatttccataacctaaactaac 42805841  T
Q  158 taaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42805842 taaataatcaatataattttcattgaggcatttgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcat 42805924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 50216398 - 50216540
Alignment:
Q  98 tatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaa 197  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||    
T  50216398 tatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaaccacataatcaataaaattgtcattgaagcattttatcaaa 50216497  T
Q  198 cactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  50216498 cactttgtgtgcaaagcataaaacatattcaaattgtgttcat 50216540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 48889326 - 48889154
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||||||||||    
T  48889326 catcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcattt---------ccataacctaaactaact 48889236  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48889235 aaataatcaatataattttcattgaggcctttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcat 48889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 17567618 - 17567724
Alignment:
Q  132 atatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaat 231  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||     
T  17567618 atatcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaa 17567717  T
Q  232 tgtgttc 238  Q
    |||||||    
T  17567718 tgtgttc 17567724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 16611594 - 16611490
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  16611594 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 16611495  T
Q  234 tgttc 238  Q
    |||||    
T  16611494 tgttc 16611490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 22047659 - 22047763
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  22047659 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 22047758  T
Q  234 tgttc 238  Q
    |||||    
T  22047759 tgttc 22047763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 41612884 - 41612780
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  41612884 atcatatccataaactaaactaactagataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 41612785  T
Q  234 tgttc 238  Q
    |||||    
T  41612784 tgttc 41612780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 52390964 - 52391055
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52390964 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgtt 52391055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 597265 - 597171
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  597265 taacctaagctaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtatcaaacataatcaaaatgtgttc 597171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 3501477 - 3501554
Alignment:
Q  163 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3501477 aatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 3501554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 2274482 - 2274574
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  2274482 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 2274574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 29009364 - 29009273
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  29009364 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 29009273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 42903758 - 42903849
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  42903758 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 42903849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 46389466 - 46389375
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  46389466 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 46389375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 50480352 - 50480443
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  50480352 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 50480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 54386628 - 54386537
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  54386628 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 54386537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 20351161 - 20351063
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcatttt-atcaaacactttgtgtgcaaagtataaaacatattcaaat 231  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  20351161 atcatatccataacctaaactaactaaataatcaataaaattgtcattgagacattttaatcaaacactttgtgtgcaaagtatcaaacatactcaaat 20351063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 49144031 - 49144121
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  49144031 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaa-atattcaaaatgtgtt 49144121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 46701593 - 46701670
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacat 223  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  46701593 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacat 46701670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 36127953 - 36127849
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| || ||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  36127953 atcatatccatagcctaaactaaccaaataatcaagaaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 36127854  T
Q  234 tgttc 238  Q
    |||||    
T  36127853 tgttc 36127849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 34045880 - 34045790
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||    
T  34045880 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaa-atactcaaaatgtgtt 34045790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 4178305 - 4178222
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaatt 232  Q
    ||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||| |||  ||||||||||    
T  4178305 taaactaactaaataatcaataaaattttcatttgggcattttgtcaaacactttgtgtgcaaagtatcaaaagtattcaaatt 4178222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 31045165 - 31045253
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||| |||  |||| |||||  |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  31045165 taaactaactaaataataaatgcaattctcattttggcattttgtcaaacactttgtgtgcaaagtatcaaacatattcacattgtgtt 31045253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 4172307 - 4172224
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaatt 232  Q
    ||||||||||||||||||||||||||| |||||  |||||||| ||||||||||| |||||||||||| |||  ||||||||||    
T  4172307 taaactaactaaataatcaataaaattctcatttgggcattttgtcaaacactttttgtgcaaagtatcaaaagtattcaaatt 4172224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 54682029 - 54681976
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54682029 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 54681976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 51807413 - 51807380
Alignment:
Q  207 tgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||    
T  51807413 tgcaaagtataaaacatattcaaattgtgttcat 51807380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 49268749 - 49268782
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaa 92  Q
    |||||| |||||||||||||||||||||||||||    
T  49268749 catcataattctcgtaacctaaactaactaaaaa 49268782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 31783210 - 31783390
Alignment:
Q  60 atcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaacta 159  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  31783210 atcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataatctaaactaacta 31783309  T
Q  160 aataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31783310 aataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 31783390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 35258354 - 35258535
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  35258354 catcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttctatcatttctataacctaaactaact 35258453  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35258454 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 35258535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 45825469 - 45825287
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  45825469 catcataattctcgtaacttaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaattaact 45825370  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc-aaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45825369 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaaagtataaaacatattcaaattgtgttcat 45825287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 23275585 - 23275765
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||| |||    
T  23275585 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactata-ttaacatcatttctatcatttccataacttaaactgact 23275683  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23275684 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 23275765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 51321305 - 51321125
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  51321305 catcataattctcataacctaaactaactaaaaa-tcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 51321207  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51321206 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaaatataaaacatattcaaattgtgttcat 51321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 52802722 - 52802545
Alignment:
Q  60 atcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaacta 159  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||    
T  52802722 atcataattctcttaacctaaactaacaaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccatagcctaaactaacta 52802623  T
Q  160 aataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52802622 aacaatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaagatattcaaattgtgtt 52802545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 19925320 - 19925153
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  19925320 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 19925222  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19925221 aattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 19925153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 30890639 - 30890472
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  30890639 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 30890541  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30890540 aattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 30890472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 59 - 236
Target Start/End: Original strand, 19527024 - 19527201
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||    
T  19527024 catcataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaaactataactaacatcatttctatcattttcataacctaaattaact 19527123  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgt 236  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  19527124 acataatcaataaaattgttattgaggcattttatcaaacactttgtgtgcaaaacataaaacatattcaaattgtgt 19527201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 47502895 - 47502726
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         |||||   ||||||    
T  47502895 catcataattcttgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctat---------aacct---ctaact 47502808  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47502807 aaataatcaataaaattgtcattgaggcattttaccaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 47502726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 49857461 - 49857605
Alignment:
Q  93 atcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcatttta 192  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||    ||||||||||| |    
T  49857461 atcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaactaactaaataatcaatataatt---tttgaggcatttga 49857557  T
Q  193 tcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49857558 tcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 49857605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 50343525 - 50343629
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  50343525 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50343624  T
Q  234 tgttc 238  Q
    |||||    
T  50343625 tgttc 50343629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 21141544 - 21141443
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  21141544 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 21141445  T
Q  234 tg 235  Q
    ||    
T  21141444 tg 21141443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 2424924 - 2425025
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2424924 atcatatccataacctaaactaaataaataatcaataaaattgttattgaggcattttatcaaacactttgtgtgcaaagtataaaac--attcaaattg 2425021  T
Q  234 tgtt 237  Q
    ||||    
T  2425022 tgtt 2425025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 22524636 - 22524561
Alignment:
Q  148 ctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22524636 ctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacat 22524561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 2365741 - 2365649
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  2365741 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 2365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 19156520 - 19156428
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  19156520 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 19156428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 47656371 - 47656283
Alignment:
Q  150 aaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  47656371 aaactaactaaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 47656283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 3731949 - 3732040
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  3731949 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 3732040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 13639591 - 13639682
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  13639591 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 13639682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 26876162 - 26876071
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  26876162 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 26876071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 97504 - 97605
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||    
T  97504 atcatatccataacctaaactaactaaataaacaataaaattatcattgaggcattttctcaaacactttgtgtacaaagtatcaaacatactcaaaatg 97603  T
Q  234 tg 235  Q
    ||    
T  97604 tg 97605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 38127048 - 38127141
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| ||||||    
T  38127048 taacctaaactaactaagtaatcaataaaattttcattgagacattttatcaaacactttgtgtgcaaagtatcaaacatactaaaaatgtgtt 38127141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 17514267 - 17514358
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||| ||||||||||||||||| |||| | |||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  17514267 taaattaactaaataatcaatataatttttatttgggcattttatcaaacactttgtgtgcaaagaatcaaacatattcaaattgtgttcat 17514358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 19526837 - 19526886
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaa 108  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  19526837 catcataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19526886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 8474259 - 8474199
Alignment:
Q  177 tcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  8474259 tcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 8474199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 19524674 - 19524716
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaatatacacttaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19524674 attctcgtaacctacactaactaaaaaatcaatatacacttaa 19524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 19524861 - 19524903
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaatatacacttaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19524861 attctcgtaacctacactaactaaaaaatcaatatacacttaa 19524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 19525522 - 19525564
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaatatacacttaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19525522 attctcgtaacctacactaactaaaaaatcaatatacacttaa 19525564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 19526657 - 19526699
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaatatacacttaa 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19526657 attctcgtaacctacactaactaaaaaatcaatatacacttaa 19526699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 25167050 - 25166976
Alignment:
Q  150 aaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacata 224  Q
    |||||||| ||| |||||||  |||  ||||| ||| |||||||||||||||||| ||||||||||| |||||||    
T  25167050 aaactaacaaaaaaatcaatgtaatcctcatttaggaattttatcaaacactttgagtgcaaagtatgaaacata 25166976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 16243106 - 16243165
Alignment:
Q  163 aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaaca 222  Q
    ||||||| ||||  ||||| ||||||||||||||||||||||| ||||||  ||||||||    
T  16243106 aatcaatgaaatattcatttaggcattttatcaaacactttgtatgcaaaagataaaaca 16243165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 31769297 - 31769118
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  31769297 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 31769198  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769197 aaataatcaataaatttgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 31769118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 6320044 - 6320225
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  6320044 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 6320143  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6320144 aaataatcaatataattttcattgaggcatttgatcaaacgctttgtgtgcaaagtataaaacatattcaaattgtgttcat 6320225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 24088263 - 24088444
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  24088263 catcataattctcataacctaaactaactaaaaaatcaatatacacctaatcaaactatcattaacatcatttctatcatttccataacctaaactaact 24088362  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24088363 aaataatcaatataattttcattgagacatttgatcaaacactttgtgtacaaagtataaaacatattcaaattgtgttcat 24088444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 24722445 - 24722341
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  24722445 atcatatccataacctaaactaactaaataatcaataaaattgtcattgacgcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 24722346  T
Q  234 tgttc 238  Q
    |||||    
T  24722345 tgttc 24722341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 26423514 - 26423413
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  26423514 atcatatccataacataaactaactaaataaacaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 26423415  T
Q  234 tg 235  Q
    ||    
T  26423414 tg 26423413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 6201653 - 6201562
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  6201653 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 6201562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 11688620 - 11688529
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  11688620 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 11688529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 21601106 - 21601015
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21601106 taaactaactaaataatcaatataattctcatttgggcattttatcaaacactttgtgtgcaaagtatcaaacatattcaaattgtgttcat 21601015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 22301685 - 22301594
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  22301685 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 22301594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 30829220 - 30829311
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  30829220 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 30829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 3501686 - 3501585
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||    
T  3501686 atcatatccataacctaaactaactaaataaacaataaaattgtccttgaggcattttctcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 3501587  T
Q  234 tg 235  Q
    ||    
T  3501586 tg 3501585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 27617220 - 27617136
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaa 230  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||    
T  27617220 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaa 27617136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 3381313 - 3381195
Alignment:
Q  110 caaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 209  Q
    ||||||||||||||||||||||  ||||||||| |||| |||||||| ||||||||||            ||||||||||||||||| ||||||||||||    
T  3381313 caaactataattaacatcattttaatcatttccataacataaactaattaaataatca------------ttgaggcattttatcaaccactttgtgtgc 3381226  T
Q  210 aaagtataaaacatattcaaattgtgttcat 240  Q
    ||  |||||||||||||||||||||||||||    
T  3381225 aatatataaaacatattcaaattgtgttcat 3381195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 15103 - 15285
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaa-aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaac 157  Q
    |||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15103 catcataattcttgtaacctaaactaaccaaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccataacctaaactaac 15202  T
Q  158 taaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15203 taaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 21022370 - 21022550
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  21022370 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataac-taaactaact 21022468  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022469 aaataatcaataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 21022550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 51683794 - 51683613
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  51683794 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 51683695  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51683694 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 51683613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 50275326 - 50275145
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  50275326 catcataattctcgtaacctacactaactaaaaaatcaatatacatttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 50275227  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50275226 acataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagcataaaacatattcaaattgtgttcat 50275145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 48256052 - 48256233
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  48256052 catcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacttaaactaact 48256151  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48256152 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgttttcat 48256233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 50902070 - 50901891
Alignment:
Q  60 atcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaacta 159  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  50902070 atcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacttaaactaacta 50901971  T
Q  160 aataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    || |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50901970 aa-aatcaataaaattgtcattgaaacattttatcaaacactttgtgtgcaaaatataaaacatattcaaattgtgttcat 50901891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 40357762 - 40357942
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  40357762 catcataattctcgtaacttaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-taaactaact 40357860  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  40357861 aaataatcaataaaattgtcattgagacattttatcaaacacttggtgtgcaaagtataaaacatattcaaactgtgttcat 40357942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 55407268 - 55407449
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  55407268 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaacgaaactataattaacatcatttctatcatttccataacctaaactaact 55407367  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| ||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55407368 aaataatcaatataattttcaatgaggcattcgatcaaacattttgtgtgcaaagtataaaacatattcaaattgtgttcat 55407449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 1089079 - 1089246
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  1089079 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 1089177  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1089178 aattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 1089246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 37021559 - 37021745
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaat-----caatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaac 153  Q
    |||||| |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||    
T  37021559 catcataattctcgtaacctaaactaactaaaaaattaatataatatacacttaaccaaactataattaacatcatttctatcattttcataacctaaac 37021658  T
Q  154 taactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37021659 taactaaataatcaataaaattgtcattgaagcattttatcaaacactttgtgtgcaaagtataaaagatattcaaattgtgttcat 37021745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 1308609 - 1308776
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  1308609 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 1308707  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1308708 aattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 1308776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 30726236 - 30726403
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  30726236 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaagtataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 30726334  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30726335 aattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 30726403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 11050037 - 11050185
Alignment:
Q  92 aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcatttt 191  Q
    ||||||||||||||| | |||||||| ||||||||| | |  ||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  11050037 aatcaatatacactttatcaaactatcattaacatcctctccatcatttccataacctaaactaactaaataatcaatataattttcattgatgcatttt 11050136  T
Q  192 atcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  11050137 atcaaatactttgtgtgcaaagtatcaaacatattcaaattgtgttcat 11050185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 21537975 - 21538114
Alignment:
Q  92 aatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcatttt 191  Q
    ||||||||||||||| | ||||||||||||||||||||||         || ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  21537975 aatcaatatacactttatcaaactataattaacatcattt---------ccataacctaaactaactaaataatcaatataattatcattgaggcatttt 21538065  T
Q  192 atcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  21538066 atcaaacactttgtgtgcaaagtatcaaacagattcaaattgtgttcat 21538114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 46436751 - 46436655
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46436751 taacctaaactaactaaataatcaataaaattgccattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 46436655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 50023099 - 50023203
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  50023099 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50023198  T
Q  234 tgttc 238  Q
    |||||    
T  50023199 tgttc 50023203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 14315925 - 14315795
Alignment:
Q  110 caaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgc 209  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||| |||| |||||  |||||||| |||||||||||| ||||    
T  14315925 caaactataattaacatcatttcaatcatttccataacctaaactaactcaataatcaatacaattttcatttgggcattttgtcaaacactttgcgtgc 14315826  T
Q  210 aaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||| ||||| |||||||||    
T  14315825 aaagtataaaacatactcaaaatgtgttcat 14315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 68098 - 68002
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  68098 taacctaaactaactaaataatcaatataattttcattgaggcatttgatcaaacactttatgtgcaaagtataaaacatattcaaattgtgttcat 68002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 50030217 - 50030321
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  50030217 atcatatccataacctaaactaactaaataatcagtaaaattgtcattgatgcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 50030316  T
Q  234 tgttc 238  Q
    |||||    
T  50030317 tgttc 50030321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 41798563 - 41798657
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||| |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41798563 accttaactaactaaataatcaataaatttgtcgttgacacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 41798657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 9892836 - 9892928
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  9892836 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgttc 9892928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 10752983 - 10753075
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatt 226  Q
    ||||||||  ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10752983 atcatttcaataacctaaactaattaaataatcaatataattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatt 10753075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 10966752 - 10966844
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatt 226  Q
    ||||||||  ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10966752 atcatttcaataacctaaactaattaaataatcaatataattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatatt 10966844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 6181358 - 6181449
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  6181358 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 6181449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 49090925 - 49090834
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  49090925 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 49090834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 30704530 - 30704436
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| | ||| |||||||    
T  30704530 taacctaaactaactaaataatcaataaaattgtcattgagatattttatcaaacactttgtgtgcaaagtatcaaacatactaaaaatgtgttc 30704436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 50193985 - 50193893
Alignment:
Q  145 aacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  50193985 aacctaaactaagtaaataatcaataaaattgtcattgagacattttatcaaacactttatgtgcaaagtatcaaacatactcaaaatgtgtt 50193893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 49165538 - 49165447
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||    
T  49165538 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaactatcaaacatactcaaaatgtgtt 49165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 14297652 - 14297546
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||||||| ||||||||||||||| ||||||||||| |||| |||||  |||||||| |||||||||||| ||||||||||||||||||| ||||| ||    
T  14297652 atcatttccataacctaaactaactcaataatcaatacaattttcatttgggcattttgtcaaacactttgcgtgcaaagtataaaacatactcaaaatg 14297553  T
Q  234 tgttcat 240  Q
    |||||||    
T  14297552 tgttcat 14297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 41933179 - 41933276
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaat 231  Q
    ||||||||| ||| ||||||||||| ||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  41933179 atcatttccataatctaaactaactcaataatcaatataattttcattggggctttttatcaaacactttgtgtgcaaagtatcaaacatattcaaat 41933276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 31422203 - 31422111
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcatttta-tcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||    
T  31422203 acctaaactaactaaataatcaataaaattgtcattgacacattttattcaaacactttgtgtgcaaagtatcaaacatactcaaaatgtgtt 31422111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 44679641 - 44679735
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    |||||||||||||||||||||||||| |||| ||||||||  ||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||    
T  44679641 taacctaaactaactaaataatcaatgaaatggtcattgaaacattttatcaaacactttgtgtgcaaaatatcaaacatactcaaaatgtgttc 44679735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 3184473 - 3184372
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||    
T  3184473 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3184374  T
Q  234 tg 235  Q
    ||    
T  3184373 tg 3184372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 3185440 - 3185541
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||    
T  3185440 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3185539  T
Q  234 tg 235  Q
    ||    
T  3185540 tg 3185541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 3185648 - 3185749
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||    
T  3185648 atcatatccataacccaaactaactaaataaaaaataaaattgtcattgaggcattttctcaaacactttgggtgcaaagtatcaaacatactcaaaatg 3185747  T
Q  234 tg 235  Q
    ||    
T  3185748 tg 3185749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 11083562 - 11083668
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||||| | ||||||||||||||| |||||||| || |||| |||||  |||||||| ||||||||||||||||||||| || ||||||| ||||| ||    
T  11083562 atcattttcataacctaaactaactcaataatcagtacaattttcatttgggcattttgtcaaacactttgtgtgcaaagcatcaaacatactcaaaatg 11083661  T
Q  234 tgttcat 240  Q
    |||||||    
T  11083662 tgttcat 11083668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 4719949 - 4720037
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgtt 237  Q
    |||||||| ||||||||||||  |||| |||||  |||||||| |||||||||||||||||||||||| ||||||||||  ||||||||    
T  4719949 taaactaagtaaataatcaatgcaattttcatttgggcattttgtcaaacactttgtgtgcaaagtatcaaacatattctcattgtgtt 4720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 68112 - 68070
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatata 101  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  68112 catcataattctcataacctaaactaactaaataatcaatata 68070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 7757916 - 7757735
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||    
T  7757916 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataatttctatcatttctatcatttccataacctaaactaact 7757817  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7757816 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatgttcaaattgtgttcat 7757735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 42941968 - 42942148
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  42941968 catcataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccagactataattaacatcatttctatcatttccataacctaaactaact 42942067  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42942068 aaa-aatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcat 42942148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 8579994 - 8580167
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataat 165  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  8579994 attctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataat 8580092  T
Q  166 caataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8580093 caataaaattgtcattgagacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 8580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 17658914 - 17658733
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  17658914 catcataattctcataacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 17658815  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17658814 aaataatcaatataattttcattgaggcatttgatcaaacactttgtatgcaaagtataaaacatattcaaattgtgttcat 17658733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 28877234 - 28877054
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  28877234 catcataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcatttccataacc-aaactaact 28877136  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28877135 aaataatcaataaaattgtcattgagacattttatcaaacacttggtgtgcaaagtataaaacatattcaaattgtgttcat 28877054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 38968690 - 38968509
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  38968690 catcataattcccgtaacctaaactaaccaaaaaaacaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 38968591  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38968590 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 38968509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 42537741 - 42537560
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42537741 catcataattctcgtaaccttaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttctatcatttccataacctaaactaact 42537642  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42537641 aaataatcaatataaatttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcat 42537560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 19228154 - 19228334
Alignment:
Q  60 atcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaacta 159  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  19228154 atcataattctcataacctaaactaactaaaaaatcaatatacacttaatcaaactataattaacatcatttttatcattttcataacctaaactaacta 19228253  T
Q  160 aataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19228254 aataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattatgttcat 19228334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 8701705 - 8701886
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| ||| || |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  8701705 catcataattttcataacctaaactaactaaacaatcaatatacacttaatcaaactataattaacatcatttctatcatttccataacctaaacaaact 8701804  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8701805 aaataatcaatataattttcattgaggcatttgatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 8701886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 28241294 - 28241461
Alignment:
Q  72 gtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataa 171  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  28241294 gtaacctaaactaactaaaaaatcaaaataaacttaaccaaactataattaacatcatttctatcatttccataac-taaactaactaaataatcaataa 28241392  T
Q  172 aattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28241393 aattgtcattgagacattttatcgaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 28241461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 512253 - 512434
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaact 158  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | |||||||||||||||    
T  512253 catcataattctcataacctaaactaactaaaaaatcaatatacacttaactaaactataattaacatcatttctataattttcataacctaaactaact 512352  T
Q  159 aaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||| ||||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  512353 aaataagcaatataattttcattgaggtatttgatcaaacactttgggtgcaaagtataaaacatattcaaattgtgttcat 512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 14260 - 14351
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14260 taaactaactaaataatcaataaaattatcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 14351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 5197490 - 5197386
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  5197490 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtatcaaacatactcaaaatg 5197391  T
Q  234 tgttc 238  Q
    |||||    
T  5197390 tgttc 5197386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 40624484 - 40624576
Alignment:
Q  148 ctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40624484 ctaaactaactaaataatcaataaaattgttattaaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 40624576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 19040685 - 19040779
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19040685 acctaaactaactaaataatcaataaatttgtcattgacacattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 19040779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 20422463 - 20422360
Alignment:
Q  137 atttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgt 236  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  20422463 atttccataacctaaactaactaaataatcaaaataattgtcattggggcattttatcaaacactttgtgtgaaaagtatcaaacatattcaaaatgtgt 20422364  T
Q  237 tcat 240  Q
    ||||    
T  20422363 tcat 20422360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 27673224 - 27673313
Alignment:
Q  149 taaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||    
T  27673224 taaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaaatatcaaacatactcaaaatgtgttc 27673313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 30705641 - 30705549
Alignment:
Q  146 acctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttc 238  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||| | ||| |||||||    
T  30705641 acctaaactaactaaataatcaataaaattgtcattgacacattttatcaaacactttgtgtgcaaaatatcaaacatactaaaaatgtgttc 30705549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 82 - 240
Target Start/End: Original strand, 233 - 390
Alignment:
Q  82 ctaactaaaaaatcaatatacacttaaccaaactataattaacatcatttatatcatttccttaacctaaactaactaaataatcaataaaattgtcatt 181  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||| |||||||||||||||    
T  233 ctaactaaaaaatcaaaatacacttaaccaaactataattaacatcatttctatcattttcataac-taaactaactaaataattaataaaattgtcatt 331  T
Q  182 gaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  332 gagacattttatcaaacacgttgtgtgcaaagtataaaacatattcaaattgtgttcat 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 7925 - 7829
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7925 taacctaaactaactaaaaaatcaataaaattgtcattgaggcattttatcaaatactttgtgtgcaaagtataaaacatattcaaattgtgttcat 7829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 7932 - 7899
Alignment:
Q  66 attctcgtaacctaaactaactaaaaaatcaata 99  Q
    ||||||||||||||||||||||||||||||||||    
T  7932 attctcgtaacctaaactaactaaaaaatcaata 7899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 18489 - 18593
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||    
T  18489 atcatatccataacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgcgtgcaaagtatcaaacatactcaaaatg 18588  T
Q  234 tgttc 238  Q
    |||||    
T  18589 tgttc 18593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 10861 - 10765
Alignment:
Q  144 taacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattgtgttcat 240  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  10861 taacctaaactaactaaataatcaatataattgtcattgagacattttttcaaacactttgtgtgtaaagtataaaacatattcaaattgtgttcat 10765  T

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Target: scaffold0155; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 10875 - 10833
Alignment:
Q  59 catcatcattctcgtaacctaaactaactaaaaaatcaatata 101  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  10875 catcataattctcataacctaaactaactaaataatcaatata 10833  T

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Target: scaffold0877 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 4210 - 4314
Alignment:
Q  134 atcatttccttaacctaaactaactaaataatcaataaaattgtcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatattcaaattg 233  Q
    ||||||| | || |||||||||||| ||||||||||| |||| |||||| |||| ||||||||||||||||||||||||  || ||||||| ||||| ||    
T  4210 atcattttcataccctaaactaactcaataatcaatataattctcattggggcactttatcaaacactttgtgtgcaaaacatcaaacatactcaaaatg 4309  T
Q  234 tgttc 238  Q
    |||||    
T  4310 tgttc 4314  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 246228 - 246180
Alignment:
Q  177 tcattgaggcattttatcaaacactttgtgtgcaaagtataaaacatat 225  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  246228 tcatttaggcattttatcaaacactttgggtgcaaagtataaaacatat 246180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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