View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_3 (Length: 459)
Name: NF0096_low_3
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 2490138 - 2490581
Alignment:
| Q |
1 |
ctttgctattagttcaaattcatttggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtg |
100 |
Q |
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| T |
2490138 |
ctttgctattagttcaaattcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtg |
2490237 |
T |
|
| Q |
101 |
tactgttagcattcatacnnnnnnnnnnnnngtggtggggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatttgtgtgt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
2490238 |
tactgttagcattcatactttttttttt---gtggtggggcgaggggcacataaaaaatcaa--tttgcaatatattgttttgatggcatatttgtgtgt |
2490332 |
T |
|
| Q |
201 |
acacaacaacaatcagaataccctgaaattcaatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctac |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490333 |
acacaacaacaatcagaataccctgaaattccatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctac |
2490432 |
T |
|
| Q |
301 |
cgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaagg |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490433 |
cgtccgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaagg |
2490532 |
T |
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| Q |
401 |
atatagtggaagtgatctgaaggtttttctctattattgttttcctatg |
449 |
Q |
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| T |
2490533 |
atatagtggaagtgatctgaaggtttttctctattattgttttcctatg |
2490581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
385 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
425 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||| |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
385 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
425 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||| |
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|
| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 426
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
285 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
384 |
Q |
| |
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|||||||| || ||||| |||| |||||||| ||||| || || ||||| |||||| | ||||| |||||| || | | |||||||||||||||| | |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
385 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
426 |
Q |
| |
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| || ||||| || ||||||| ||||||||| | ||||||| |
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| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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