View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_4 (Length: 454)
Name: NF0096_low_4
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 4487639 - 4487179
Alignment:
| Q |
1 |
ctaatggcgagttgatctatcaaaaacattaaaagaaaacttcaaaggcagtccattaattataattcaacgtaatccaagaattcttacgcaaacaatc |
100 |
Q |
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| T |
4487639 |
ctaatggcgagttgatctatcaaaaacattaatagaaaacttcaaagacagtccattaattataattcaacgtaatccaagaattcttacgcaaacaatc |
4487540 |
T |
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| Q |
101 |
aagttctaagnnnnnnna--atgtatcgaagaaaaaaagctcagagtttctttttaacaaagtaaagctctaacnnnnnnnnnnn-----aaagcaaaaa |
193 |
Q |
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| T |
4487539 |
aagttctaagttttttttttatgtatcaaagaaaaaaagctcaaagtttctttttaacaaagtaaagctctaacttttttttttttttttaaagcaaaaa |
4487440 |
T |
|
| Q |
194 |
taaagctctaagttcattggtctgtaaagagagaatatgttaatagttgcagaaaatataaataactcaagtagaaaaagaaagagattttgtaaattac |
293 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487439 |
taaagatctaagttcattggtctgtaaagagagaatatgttaatagttgcagaaaatataaataactcaagtagaaaaagaaagagattttgtaaattac |
4487340 |
T |
|
| Q |
294 |
ctacaaaccacttgtccaaccatgtcactttatttttacacggattaagtaggacgaaccaacttaaatggtagagttcaaaaccttaatttatcccatc |
393 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487339 |
ctacaaaccactagtccaaccatgtcactttatttttacacggattaagtaggacgaaccaacttaaatggtagagttcaaaaccttaatttatcccatc |
4487240 |
T |
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| Q |
394 |
ttaaatgacagttaaatagttgtgctaataggcttaacatttttcacctctatctcttcat |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4487239 |
ttaaatgacagttaaatagttgtgctaataggcttaacatttttcacccctatctcttcat |
4487179 |
T |
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