View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_5 (Length: 453)
Name: NF0096_low_5
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 355
Target Start/End: Complemental strand, 2490296 - 2489972
Alignment:
| Q |
28 |
ttgattttttatgtgcccctcgccccaccacnnnnnnnnnnnnngtatgaatgctaacagtacacactattagacactctttctcaacataacctatatc |
127 |
Q |
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| T |
2490296 |
ttgattttttatgtgcccctcgccccaccac---aaaaaaaaaagtatgaatgctaacagtacacactattagacactctttctcaacataacctatatc |
2490200 |
T |
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| Q |
128 |
attgattgaaaaactaacgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagc |
227 |
Q |
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| T |
2490199 |
attgattgaaaaactaatgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagc |
2490100 |
T |
|
| Q |
228 |
actcttcaggtactaagaaagagcacaaaaaattcattgtacatgtagaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490099 |
actcttcaggtactaagaaagagcacaaaaaattcattgtacatgtcgaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagt |
2490000 |
T |
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| Q |
328 |
caaagggcctattggttgcagcgaggac |
355 |
Q |
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| T |
2489999 |
caaagggcctattggttgcagcgaggac |
2489972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 41590948 - 41591005
Alignment:
| Q |
289 |
accttctttcaaatcgtctaataattgcttcatccaagtcaaagggcctattggttgc |
346 |
Q |
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|||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||||| |
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| T |
41590948 |
acctcctttcaaatcgccttataatagcttcatccaagtcaaatggcctattggttgc |
41591005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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