View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0096_low_6 (Length: 436)

Name: NF0096_low_6
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0096_low_6
NF0096_low_6
[»] chr6 (1 HSPs)
chr6 (10-407)||(9412207-9412601)
[»] chr1 (2 HSPs)
chr1 (112-171)||(7561332-7561391)
chr1 (113-173)||(7555512-7555572)
[»] chr5 (3 HSPs)
chr5 (361-397)||(32268631-32268667)
chr5 (122-162)||(41886296-41886336)
chr5 (369-405)||(41900426-41900462)
[»] chr4 (5 HSPs)
chr4 (372-407)||(7225096-7225131)
chr4 (115-164)||(554097-554146)
chr4 (119-160)||(566754-566795)
chr4 (113-165)||(642341-642393)
chr4 (116-168)||(1537245-1537297)
[»] chr3 (1 HSPs)
chr3 (117-164)||(51120325-51120372)
[»] chr7 (1 HSPs)
chr7 (122-159)||(10616209-10616246)
[»] chr2 (1 HSPs)
chr2 (117-166)||(45244521-45244570)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 9412601 - 9412207
Alignment:
Q  10 cctaaccctttcatagtaaatatcattcaccagagacacagctatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgtttctgcc 109  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  9412601 cctaaccctttcatagtaaatatcattcaccagaaacacagccatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgttgttgcc 9412502  T
Q  110 gatgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatggtgctaactatcgcgacttgaagtctctctcgcttgtct 209  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  9412501 gatg---atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatggtgctaactatcgcgagttgaagtctctctcgcttgtct 9412405  T
Q  210 ccaagttgtttctctccatcaccaaccgtcttttcatctcacttacggtctacaacaacggaataggtccttttctcggtagcatactcggtaggttcac 309  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412404 ccaagttgtttctctccatcaccaaccgtcttgtcatctcacttacggtctacaacaacggaataggtccttttctcggtagcatactcggtaggttcac 9412305  T
Q  310 caacctcacctctctcaaaatcaagcgctacaaaagcattgattttaatgtgcttctcggtcaaatctctcgttttccattgaaactctcatcactta 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412304 caacctcacctctctcaaaatcaagcgctacaaacgcattgattttaatgtgcttctcggtcaaatctctcgttttccattgaaactctcatcactta 9412207  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 7561391 - 7561332
Alignment:
Q  112 tgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatgg 171  Q
    |||||||||||||||||||||||| |||||| ||  | ||||||| ||||||||||||||    
T  7561391 tgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg 7561332  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 7555572 - 7555512
Alignment:
Q  113 gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatggtg 173  Q
    |||| |||||||||||| |||||||||||| ||  | |||||||||| |||||||| ||||    
T  7555572 gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtg 7555512  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 32268667 - 32268631
Alignment:
Q  361 gcttctcggtcaaatctctcgttttccattgaaactc 397  Q
    ||||||| |||||||||||||||||||||||||||||    
T  32268667 gcttctctgtcaaatctctcgttttccattgaaactc 32268631  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  122 tatttacctgatgaatgttgggaaagtatcttcaaattcct 162  Q
    |||||||||||||| ||||||||| || |||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 41900426 - 41900462
Alignment:
Q  369 gtcaaatctctcgttttccattgaaactctcatcact 405  Q
    |||||||||||| |||||||||||||||| |||||||    
T  41900426 gtcaaatctctcattttccattgaaactcacatcact 41900462  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 7225096 - 7225131
Alignment:
Q  372 aaatctctcgttttccattgaaactctcatcactta 407  Q
    |||||||||||||||||||||||||| |||||||||    
T  7225096 aaatctctcgttttccattgaaactcacatcactta 7225131  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 554146 - 554097
Alignment:
Q  115 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 164  Q
    ||||||||| || ||||||||||||||||||  | |||||||||||||||    
T  554146 tgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 566795 - 566754
Alignment:
Q  119 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 160  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  566795 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 642393 - 642341
Alignment:
Q  113 gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaa 165  Q
    ||||| ||||||||||||||||||||||||||  | |||||||| || |||||    
T  642393 gctgagttttatttacctgatgaatgttgggagtgcatcttcaattttctcaa 642341  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 1537245 - 1537297
Alignment:
Q  116 gatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaa 168  Q
    ||||| |||||||||||||| ||||||||| || | |||| ||||||||||||    
T  1537245 gatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaa 1537297  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 51120325 - 51120372
Alignment:
Q  117 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 164  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  51120325 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  122 tatttacctgatgaatgttgggaaagtatcttcaaatt 159  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 45244521 - 45244570
Alignment:
Q  117 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac 166  Q
    |||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctcaac 45244570  T

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