View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_7 (Length: 415)
Name: NF0096_low_7
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 34060230 - 34059934
Alignment:
| Q |
16 |
cctgtgtaagatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaaccgatac |
115 |
Q |
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| T |
34060230 |
cctgtgtaagatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaactgatac |
34060131 |
T |
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| Q |
116 |
tgatgatcttgtatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgat |
215 |
Q |
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| T |
34060130 |
tgatgatcttgcatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgat |
34060031 |
T |
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| Q |
216 |
gattggttgattttatcgaagtctgtcnnnnnnnnnnnncagctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaacgc |
315 |
Q |
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| T |
34060030 |
gattggttgattttatcgaagtatgt-----aaaaaaaacagctatactaggtagcatgcactgttgtactgctcttttagagttggaaactatgaacgc |
34059936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 22232039 - 22232261
Alignment:
| Q |
24 |
agatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaaccgatactgatgatc |
123 |
Q |
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| T |
22232039 |
agatcgttgcaaagttgataaactcgtggtactctttgcagaactgttttgcacgtctttcggatgtgatgagtgagtttaccaactgatgctgatgatc |
22232138 |
T |
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| Q |
124 |
ttgtatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgtt---------ttctgtga |
214 |
Q |
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| T |
22232139 |
ttgcgtcaaccgtgaatacagtttggtagaaatcaacatagccttgaaacttgtctctcaatctctgaattgaatctaccgtttgctgcagattttgtga |
22232238 |
T |
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| Q |
215 |
tgattggttgattttatcgaagt |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
22232239 |
tgattggttgattttatcgaagt |
22232261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 22232275 - 22232332
Alignment:
| Q |
256 |
agctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaac |
313 |
Q |
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||||| ||| || |||||||| |||||| |||||||||| || ||||||||||||||| |
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| T |
22232275 |
agctacacttggcagcatgcattgttgtcctgctcttttggaattggaaactatgaac |
22232332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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