View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_8 (Length: 398)
Name: NF0096_low_8
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 34060230 - 34059934
Alignment:
| Q |
1 |
cctgtgtaagatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaaccgatac |
100 |
Q |
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| T |
34060230 |
cctgtgtaagatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaactgatac |
34060131 |
T |
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| Q |
101 |
tgatgatcttgtatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgat |
200 |
Q |
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| T |
34060130 |
tgatgatcttgcatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgat |
34060031 |
T |
|
| Q |
201 |
gattggttgattttatcgaagtctgtcnnnnnnnnnncagctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
300 |
Q |
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| T |
34060030 |
gattggttgattttatcgaagtatgt---aaaaaaaacagctatactaggtagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
34059934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 22232039 - 22232332
Alignment:
| Q |
9 |
agatcattgcaaagttgataaagttgtcgtactctttggagaattattttgcacttttttctgatgtgatgagcgagtttactaaccgatactgatgatc |
108 |
Q |
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||||| |||||||||||||||| | || |||||||||| |||| | |||||||| | |||| ||||||||||| |||||||| ||| ||| ||||||||| |
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| T |
22232039 |
agatcgttgcaaagttgataaactcgtggtactctttgcagaactgttttgcacgtctttcggatgtgatgagtgagtttaccaactgatgctgatgatc |
22232138 |
T |
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| Q |
109 |
ttgtatcaactatgaatacaattgagtacagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctg---------tga |
199 |
Q |
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||| ||||| |||||||| || ||| | ||||| || |||||||||||| |||||||||||||||||||||| || |||| ||| ||| |
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| T |
22232139 |
ttgcgtcaaccgtgaatacagtttggtagaaatcaacatagccttgaaacttgtctctcaatctctgaattgaatctaccgtttgctgcagattttgtga |
22232238 |
T |
|
| Q |
200 |
tgattggttgattttatcgaagtctgtcnnnnnnnnnncagctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaac |
296 |
Q |
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||||||||||||||||||||||| ||| ||||| ||| || |||||||| |||||| |||||||||| || ||||||||||||||| |
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| T |
22232239 |
tgattggttgattttatcgaagtgtgtgagaacaat---agctacacttggcagcatgcattgttgtcctgctcttttggaattggaaactatgaac |
22232332 |
T |
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