View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_9 (Length: 357)
Name: NF0096_low_9
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 279
Target Start/End: Complemental strand, 53042362 - 53042109
Alignment:
| Q |
28 |
actcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggtttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042362 |
actcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaatagtgtgaatctagcctaaataagtgatagaggtttg |
53042263 |
T |
|
| Q |
128 |
agatttgaaccaaagatttgataaattatattcctcaacaagagaaaaataaaacttgtcaaaagaagccatcaatgtcttcatg--tatgtatatttaa |
225 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
53042262 |
agatttgaaccaaagatttaataaattatattcctcaacaagagaaaaataaaacttgtcaaaagaagccatcaatgtcttcatgtatatttaaatttaa |
53042163 |
T |
|
| Q |
226 |
gacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaaccatcatttt |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042162 |
gacaaaatgttatatgttgtaaatgaagaaaatcattgttgcaaccatcatttt |
53042109 |
T |
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