View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097-Insertion-2 (Length: 226)
Name: NF0097-Insertion-2
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 28491455 - 28491671
Alignment:
| Q |
8 |
aaatccttccggcaattcgtaacaccgcctttgtctttacgcccatgttgagccctaaggacccaaaagaatggaagattcgacttctccaatcctaaag |
107 |
Q |
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| T |
28491455 |
aaatccttccggcaatt-gtaacaccgcctt-gtctttacgcccatgttgagccctaaggacccaaaagaatggaagattcgacttctccaatcctaaag |
28491552 |
T |
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| Q |
108 |
ctatctcattgacttcttcttgactcggtgttgcttcgctaccaaaagccacatataccactgagccatgaggttggttgtctaaccaattcttgatccc |
207 |
Q |
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| T |
28491553 |
ctatctcattgacttcttcttgactcggtgttgcttcgctaccaaaagccacatataccactgagccatgaggttggttgtctaaccacttcttgatccc |
28491652 |
T |
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| Q |
208 |
ttgccatgtgtcattttca |
226 |
Q |
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| T |
28491653 |
ttgccatgtgtcattttca |
28491671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 28494824 - 28494959
Alignment:
| Q |
60 |
ccctaaggacccaaaagaatggaagattcgacttctccaatcctaaagctatctcattgacttcttcttgactcggtgttgcttcgctaccaaaagccac |
159 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
28494824 |
ccctaaggacccaaaagaatggaaggtttgacttctccaaccctaaagctatctcattcacttcttcttgacttggttttgcttcactaccaaaagccac |
28494923 |
T |
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| Q |
160 |
atataccactgagccatgaggttggttgtctaacca |
195 |
Q |
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| T |
28494924 |
atataccactgtgccatttggtttcttgtctaacca |
28494959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 28507373 - 28507536
Alignment:
| Q |
63 |
taaggacccaaaagaatggaagattcgacttctccaatcctaaagctatctcattgacttcttcttgactcggtgttgcttcgctaccaaaagccacata |
162 |
Q |
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| T |
28507373 |
taaggacccaaaagaatggaaggtttgacttctctaaccctaaagctatctcattcacttcttcttgacttggttttgcttcactaccaaaagctacata |
28507472 |
T |
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| Q |
163 |
taccactgagccatgaggttggttgtctaaccaattcttgatcccttgccatgtgtcattttca |
226 |
Q |
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| T |
28507473 |
taccactgtgccatgtggttgcttgtccaaccactcctttatcctcggccatgagtcattttca |
28507536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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