View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_high_1 (Length: 600)
Name: NF0097_high_1
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 86 - 600
Target Start/End: Complemental strand, 38620821 - 38620301
Alignment:
| Q |
86 |
gctgttgctggcgtaaatattactttcatgattatgcaaatgttagaccttgatgcagcaagtatgtcatgtggatgagcct----ttctatcactatgc |
181 |
Q |
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| T |
38620821 |
gctgttgctggcgtaaatattactttcatgattatgcaaatgttagaccttgatgcagcaagtatgtcatgtggatgagcctgcctttctatcactatgc |
38620722 |
T |
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| Q |
182 |
tttgtgttccaaagatatttaatgcatgtatggaattggcggtgaatttgacaaaatcacaatgctaaattgtgaatccgacagattcactgtcaatcca |
281 |
Q |
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| T |
38620721 |
attgtgttccaaagatatttaatgcatgtatggaattggcggtgaatttgacaaaatcacagtgctacattgtgattccgacagattcaccgtcaatcca |
38620622 |
T |
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| Q |
282 |
aatgtgcacttatacacttgctttgttaacattttcccatttaattaaaacacgggtctagtagcccgagtctcttattaaactcaaattgaaaacaata |
381 |
Q |
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| T |
38620621 |
aatgtgcacttatacacttgctttgttaacattttcccatttaattaaaacacgggtctagtagcccgagtctcttattaaactcaaattgaaaacaata |
38620522 |
T |
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| Q |
382 |
tactgctaatgccgggaagtttcttcacttgcagccaaacccaggactttcataagaacagtttttctacaaatgctgtcaggtaagaattagaaactat |
481 |
Q |
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| T |
38620521 |
tactgctaatgccgggaagtttcttcacttgcagccaaacccaggactttcataagaacagtttttctacaaatgctgtcaggtaagaattagaaactat |
38620422 |
T |
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| Q |
482 |
tgttttattttgttttgagaaggaaaacctaaattgatcacaatttcgtcctctgcattataaccattcttatg--atattctcaacatttgcagaaaat |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38620421 |
tgttttattttgttttgagaaggaaaacctaaattgatcacaatttcgtcctctgcattataaccattcttatgatatattctcaacatttgcagaaaat |
38620322 |
T |
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| Q |
580 |
gagtgggcatttgatttgctt |
600 |
Q |
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| T |
38620321 |
gagtgggcatttgatttgctt |
38620301 |
T |
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