View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_high_12 (Length: 249)
Name: NF0097_high_12
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 7655742 - 7655529
Alignment:
| Q |
9 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
108 |
Q |
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| T |
7655742 |
tgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
7655643 |
T |
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| Q |
109 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagct |
208 |
Q |
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| T |
7655642 |
gactgcagggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagca |
7655543 |
T |
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| Q |
209 |
ggtgttgcagggcc |
222 |
Q |
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|||||||||||||| |
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| T |
7655542 |
ggtgttgcagggcc |
7655529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
80 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
165 |
Q |
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| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 52102974 - 52103166
Alignment:
| Q |
9 |
tgagatgaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgt |
108 |
Q |
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| T |
52102974 |
tgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatgtttcctccaatgaaagcaccaaatgt |
52103073 |
T |
|
| Q |
109 |
gactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgag |
201 |
Q |
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| T |
52103074 |
gactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgagataatgatgcaactatgag |
52103166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 23339615 - 23339438
Alignment:
| Q |
20 |
caagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggt |
119 |
Q |
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||||||||||| |||||||| ||||| ||||||||||| |||| | ||| | |||||||||| ||| |||||||| |||||||| ||||| ||||||| |
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| T |
23339615 |
caagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggt |
23339516 |
T |
|
| Q |
120 |
tcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagcta |
197 |
Q |
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| T |
23339515 |
tgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagcta |
23339438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
116 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
165 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
101 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
174 |
Q |
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| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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