View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0097_high_3 (Length: 439)
Name: NF0097_high_3
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0097_high_3
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 38943012 - 38942708
Alignment:
Q
30
gatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgg
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
38943012
gatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgg
38942913
T
Q
130
gtggttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagggagatgagattattgtgatagtatgaattgttgaggttgttg
229
Q
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||
T
38942912
gtggttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattattgtggtagtatgaattgttgaggttgttg
38942814
T
Q
230
tgattgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaagtagattcaggaaagttttttgaaaagga
329
Q
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
T
38942813
tcattgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagttttttaggtacaagtagattcaggaaagctttttgaaaagga
38942714
T
Q
330
aaacag
335
Q
||||||
T
38942713
aaacag
38942708
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
Q
163
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat
260
Q
|||||||||||||| | ||||| |||||||| |||||||| || |||||| | ||||||||||| ||||| ||| |||||| | | ||||||||
T
13723893
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat
13723992
T
Q
261
ttcctgtgtgtgtagattcag
281
Q
||||||||| | |||||||||
T
13723993
ttcctgtgtttttagattcag
13724013
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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