View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0097_low_10 (Length: 288)

Name: NF0097_low_10
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0097_low_10
NF0097_low_10
[»] chr8 (5 HSPs)
chr8 (52-226)||(291749-291923)
chr8 (52-226)||(9506577-9506751)
chr8 (60-153)||(268576-268669)
chr8 (60-153)||(647252-647345)
chr8 (60-153)||(832987-833080)
[»] chr7 (1 HSPs)
chr7 (60-226)||(12860616-12860782)
[»] chr3 (3 HSPs)
chr3 (60-223)||(17778330-17778493)
chr3 (60-223)||(19079631-19079794)
chr3 (64-161)||(2294375-2294472)
[»] chr1 (3 HSPs)
chr1 (59-226)||(139511-139678)
chr1 (59-226)||(164911-165078)
chr1 (64-226)||(18214547-18214709)
[»] chr6 (3 HSPs)
chr6 (59-226)||(19823337-19823511)
chr6 (60-135)||(19888428-19888503)
chr6 (180-225)||(19888554-19888599)
[»] chr2 (4 HSPs)
chr2 (60-153)||(18599464-18599557)
chr2 (60-153)||(18604963-18605056)
chr2 (64-202)||(29560775-29560913)
chr2 (60-225)||(19388254-19388417)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 291749 - 291923
Alignment:
Q  52 gttgcttctttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcac 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  291749 gttgcttctttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcac 291848  T
Q  152 ctctagcaccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  291849 ctctagcaccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 291923  T

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Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 9506577 - 9506751
Alignment:
Q  52 gttgcttctttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcac 151  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9506577 gttgcttctttctcttctcgtggcccaaatcagttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcac 9506676  T
Q  152 ctctagcaccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
    || |||| |||| ||||| | ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  9506677 ctatagcgccactctcaggcaatataaatgacaaaagacatgtcaaatacaacataaaatctggaacctctatgg 9506751  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 268576 - 268669
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacct 153  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| ||||||||  |||||||||| |||||| |||||    
T  268576 tttctcttctcgtggcccaaatcctatggttcctgaaattatgaaaccagatataagtgctccaggagttaatatcttggctgcatatccacct 268669  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 647345 - 647252
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacct 153  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| ||||||||  |||||||||| |||||| |||||    
T  647345 tttctcttctcgtggcccaaatcctatggttcctgaaattatgaaaccagatataagtgctccaggagttaatatcttggctgcatatccacct 647252  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 833080 - 832987
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacct 153  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||| ||||||||  |||||||||| |||||| |||||    
T  833080 tttctcttctcgtggcccaaatcctatggttcctgaaattatgaaaccagatataagtgctccaggagttaatatcttggctgcatatccacct 832987  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 12860782 - 12860616
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagca 159  Q
    |||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||      
T  12860782 tttctcttctcgtggcccaaatcctttagttctagaaatcatgaaaccagatattagtgccccaggagtggagatcttggccgcatattcacctataggg 12860683  T
Q  160 ccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
     |||||||||  ||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||    
T  12860682 tcaccctcaggtgatataagtgataaaagacatgtcaaatacaacatagaatctggaacctctatgg 12860616  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 17778493 - 17778330
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagca 159  Q
    |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||     
T  17778493 tttctcttctcgtggcccaaatcctttggtcccataaattatgaaaccagatataagtgtcccaggagtggaaatcttagccgcatattcacctctagcg 17778394  T
Q  160 ccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctcta 223  Q
     |||||||| | ||||||| ||||||||||||||| || |||| |||  | |||||||| ||||    
T  17778393 tcaccctcatatgatataattgacaaaagacaggttaagtacaccattaattctggaacttcta 17778330  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 19079794 - 19079631
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagca 159  Q
    |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||     
T  19079794 tttctcttctcgtggcccaaatcctttggtcccataaattatgaaaccagatataagtgtcccaggagtggaaatcttagccgcatattcacctctagcg 19079695  T
Q  160 ccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctcta 223  Q
     |||||||| | ||||||| ||||||||||||||| || |||| |||  | |||||||| ||||    
T  19079694 tcaccctcatatgatataattgacaaaagacaggttaagtacaccattaattctggaacttcta 19079631  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 2294375 - 2294472
Alignment:
Q  64 tcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagcacc 161  Q
    |||||||| |||||||||||     ||||||||||| ||||||||||||||  ||| || ||| ||||||| ||||| |||||||||||| |||||||    
T  2294375 tcttctcgaggcccaaatcctagaattctagaaattttgaaaccagatatatctgctccgggactggatattttggctgcatattcacctatagcacc 2294472  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 139678 - 139511
Alignment:
Q  59 ctttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagc 158  Q
    |||||||||| |||||||||||||  |  |||| ||||||||||||||||||||||||||||||||||  ||| |||||||| |||||||||||| ||||    
T  139678 ctttctcttcacgtggcccaaatcgttatgttccagaaattatgaaaccagatataagtgccccaggaacggaaatcttggctgcatattcacctttagc 139579  T
Q  159 accaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
    | ||||||||  |||||||||||| || ||| || | ||||||| ||||  |||||||||||||||||    
T  139578 atcaccctcatccgatataaatgataagagaaagtttaaatacaacatattatctggaacctctatgg 139511  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 165078 - 164911
Alignment:
Q  59 ctttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagc 158  Q
    |||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| || |    
T  165078 ctttctcttcacgtggcccaaatccttttgttccagaaattatgaaaccagatataagtgctccaggagtggaaatcttggctgcatattcacctttaac 164979  T
Q  159 accaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
      ||||||||   ||||||  |||||| ||| || | ||||||| ||||  |||||||||||||||||    
T  164978 gtcaccctcatcggatataggtgacaagagaaagtttaaatacaacatattatctggaacctctatgg 164911  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 18214547 - 18214709
Alignment:
Q  64 tcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagcaccac 163  Q
    |||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||| ||  | || |||||||||||| |||| ||||    
T  18214547 tcttctcgtggcccaaatccttttgttccagaaataatgaaaccagatataagtgccccaggagtggaaattcttgctgcatattcacctttagcgccac 18214646  T
Q  164 cctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
    || ||   ||||||| ||| |||||| |  | ||||||| ||||  ||| |||||||||||||    
T  18214647 ccacattggatataagtgataaaagaaaatttaaatacaacatattatccggaacctctatgg 18214709  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 19823337 - 19823511
Alignment:
Q  59 ctttctcttc-tcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctag 157  Q
    ||||||||||  ||||||||||||||  |  |||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||  |||||  |||    
T  19823337 ctttctcttccncgtggcccaaatcctatcattcctgaaattatgaaaccagatataagtgccccaggagttgatatcttggctgcatggtcaccattag 19823436  T
Q  158 caccaccctcagacgat----ataa--atgacaaaagacaggtcaaatacagcatagaatctggaacctctatgg 226  Q
      |||||||||||||||    ||||  ||||||||||||| || ||||||| |||||||||||||||||||||||    
T  19823437 agccaccctcagacgattttaataactatgacaaaagacatgttaaatacaacatagaatctggaacctctatgg 19823511  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 19888428 - 19888503
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatc 135  Q
    |||||||||||| |||||||||||  |  |||  ||||||||||||||||||||||||||||||||||| ||||||    
T  19888428 tttctcttctcgcggcccaaatcctgtcattcctgaaattatgaaaccagatataagtgccccaggagttgatatc 19888503  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 19888554 - 19888599
Alignment:
Q  180 tgacaaaagacaggtcaaatacagcatagaatctggaacctctatg 225  Q
    |||||||||||  || ||||||| ||||||||||||||||||||||    
T  19888554 tgacaaaagacgtgttaaatacaacatagaatctggaacctctatg 19888599  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 18599464 - 18599557
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacct 153  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||    
T  18599464 tttctcttctcgtggctcaaatcctttggttcaagaaattatgaaaccagatataagtgcccctggagtagaaatcttggctgcatattcacct 18599557  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 18604963 - 18605056
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacct 153  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||    
T  18604963 tttctattctcgtggcccaaatcctttggttcaagaaattatgaaaccagatataagtgcccctggagtagaaatcttggctgcatattcacct 18605056  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 29560775 - 29560913
Alignment:
Q  64 tcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagcaccac 163  Q
    |||||||||||||||||||  ||||| | | |||| ||||||||||||||||||||||||||||| || |||||  |||||||||||||| ||||  |||    
T  29560775 tcttctcgtggcccaaatcttttggtcccataaatcatgaaaccagatataagtgccccaggagtagaaatcttacccgcatattcacctatagcgtcac 29560874  T
Q  164 cctcagacgatataaatgacaaaagacaggtcaaataca 202  Q
    ||||| |  ||  || ||| ||||||||||| |||||||    
T  29560875 cctcatattatccaagtgataaaagacaggttaaataca 29560913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 19388254 - 19388417
Alignment:
Q  60 tttctcttctcgtggcccaaatccgttggttctagaaattatgaaaccagatataagtgccccaggagtggatatcttggccgcatattcacctctagca 159  Q
    |||||||||||||||||||||||| | | ||| |||||||||||||||||  ||||| ||||||||||| || ||| || | |||||||||||| ||       
T  19388254 tttctcttctcgtggcccaaatccttcgattcaagaaattatgaaaccag--ataagcgccccaggagtagaaatcctgactgcatattcacctttaaat 19388351  T
Q  160 ccaccctcagacgatataaatgacaaaagacaggtcaaatacagcatagaatctggaacctctatg 225  Q
     ||||||||   ||||| | |||||| ||| |||| || |||| ||||  ||||||||||||||||    
T  19388352 tcaccctcaatggatattagtgacaatagaaaggttaagtacaccatattatctggaacctctatg 19388417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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