View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0097_low_14 (Length: 255)
Name: NF0097_low_14
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 30407113 - 30407315
Alignment:
| Q |
29 |
agattaacctaccaaaatattggtatggaaattgtataaagacactagtgtgtttcaatgagtatctagaaaatttaaaatgataatgattggctaaaga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30407113 |
agattaacctaccaaaatattggtatggaaattgtataaagacactagtgtgtttcaatgagtatctagaaaatttaaaatgataatgattggctaaaga |
30407212 |
T |
|
| Q |
129 |
ccttccaaaactaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30407213 |
ccttccaaaactaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtg |
30407312 |
T |
|
| Q |
229 |
atg |
231 |
Q |
| |
|
||| |
|
|
| T |
30407313 |
atg |
30407315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 30393529 - 30393721
Alignment:
| Q |
41 |
caaaatattggtatggaaattgtataaagacactagtgt--gtttcaatgagtatctagaaaatttaaaatgataatgattggctaaagaccttccaaaa |
138 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
30393529 |
caaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaa |
30393628 |
T |
|
| Q |
139 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatg |
231 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30393629 |
ctaagaaaaccaaaacctgttgtttctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatg |
30393721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1426 times since January 2019
Visitors: 1299