View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_low_2 (Length: 587)
Name: NF0097_low_2
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 184 - 578
Target Start/End: Original strand, 39072845 - 39073240
Alignment:
| Q |
184 |
atcgtcttttgagtttgagtatcctttatactcgttttattgaatattcatttcttctgttgttcnnnnnnn-gttgatcaaatatctcaaattaacccc |
282 |
Q |
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| T |
39072845 |
atcgtcttttgagtttgagtatcatttatattcgttttattgaatattcatttcttctgttgttcaaaaaaaagttgatcaaatatctcaaattaacccc |
39072944 |
T |
|
| Q |
283 |
tttt-attgtttattccctcttctcttttagctaattaaagnnnnnnnnnnnggtagaattttagctaattaaagtattaaatcaataaagatacacaag |
381 |
Q |
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| T |
39072945 |
tttttattgtttattccctcttatcttttagctaattaaagtttttttttt-ggtagaattttagctaattaaagtattaaatcaataaagatacacaag |
39073043 |
T |
|
| Q |
382 |
atcatctaactagctagatccatcaaaattagaacctaacacttcatatttttcatatatataattgtttttggtcatggaaaataaccaaaataatact |
481 |
Q |
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| T |
39073044 |
atcatctaactagctagatccatcaaaattagaacctaacacttcatatttttcatatatataattgtttttggtcatggaaaataaccaaaataatact |
39073143 |
T |
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| Q |
482 |
agtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaacaaaaccgtattattctccaacaagatcatcatcaagttcctatga |
578 |
Q |
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| T |
39073144 |
agtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaacaaaaccgtattattctccaacaagatcatcatcaagttcctatga |
39073240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 39072756 - 39072818
Alignment:
| Q |
95 |
tgtgtgagttaactattatttataagcagcgttgtttcatttcaaatgatcatatccaaaaat |
157 |
Q |
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| T |
39072756 |
tgtgtgcgttaactattatttataagtagcgttgtttcatttcatatgatcatatccaaaaat |
39072818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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