View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_low_3 (Length: 540)
Name: NF0097_low_3
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 43964132 - 43963635
Alignment:
| Q |
1 |
tagtatattaataatgtttaactctaacttcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaac |
100 |
Q |
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| T |
43964132 |
tagtatattaataatgtttaactctaacttcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaac |
43964033 |
T |
|
| Q |
101 |
cttcttatggtggtgatgatgaggcattcttgcgcaaggttatatctcccatatacaaagtcattcatacggtatgctttttcttcttctttctgttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43964032 |
cttcttatggtggtgatgatgaggcattcttgcgcaaggttatatctcccatatacaaagtcattcatacggtatgctttttcttcttctttctgttatg |
43963933 |
T |
|
| Q |
201 |
gtcgttgttagctagcttcaggtacctttctactaagtgatgagctataatcaattaattaatacaggaagctgagaaaagcagaaatggaatggctcct |
300 |
Q |
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| T |
43963932 |
gtcgttgttagctagcttcaggtacctttctactaagtgatgagctataatcaattaattaatacaggaagctgagaaaagcagaaatggaatggctcct |
43963833 |
T |
|
| Q |
301 |
cactcagcctggtgcaattacgatgatctaaatgagtatttctggttagtttggcttttggtttcatatcctattgaatccgatttttctggcttgtttc |
400 |
Q |
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| T |
43963832 |
cactcagcctggtgcaattacgatgatctaaatgagtatttctggttagtttggcttttggtttcatatcctattgaatccgatttttctggcttgtttt |
43963733 |
T |
|
| Q |
401 |
gtctttaattaattgacaatttattgatttagtgatcaatgtattttgttgcaggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
498 |
Q |
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| T |
43963732 |
gtctttaattaattgacaatttattgatttagtgatcaatgtattttgttgcaggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 39166603 - 39166477
Alignment:
| Q |
30 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
129 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
39166603 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
39166504 |
T |
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| Q |
130 |
ttgcgcaaggttatatctcccatatac |
156 |
Q |
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| T |
39166503 |
ctacgaaaggttatcacacccatatac |
39166477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 39166365 - 39166278
Alignment:
| Q |
265 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
352 |
Q |
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| T |
39166365 |
caggaatctaagaaaagcagaaatggaaaggcttcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
39166278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 498
Target Start/End: Complemental strand, 39166196 - 39166144
Alignment:
| Q |
446 |
ttgttgcaggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
498 |
Q |
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|||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
39166196 |
ttgttgcaggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 5539224 - 5539154
Alignment:
| Q |
282 |
cagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
352 |
Q |
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||||||||||| |||| | |||||||| |||||||| || |||||||||||||||||||| ||||| |||| |
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| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttt |
5539154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 498
Target Start/End: Complemental strand, 5539072 - 5539020
Alignment:
| Q |
446 |
ttgttgcaggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
498 |
Q |
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|||||||||| ||| |||||||||||||||||||||||| || ||||||||| |
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| T |
5539072 |
ttgttgcaggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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