View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_low_4 (Length: 439)
Name: NF0097_low_4
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 38943012 - 38942708
Alignment:
| Q |
30 |
gatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgg |
129 |
Q |
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| T |
38943012 |
gatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgg |
38942913 |
T |
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| Q |
130 |
gtggttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagggagatgagattattgtgatagtatgaattgttgaggttgttg |
229 |
Q |
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| T |
38942912 |
gtggttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattattgtggtagtatgaattgttgaggttgttg |
38942814 |
T |
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| Q |
230 |
tgattgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaagtagattcaggaaagttttttgaaaagga |
329 |
Q |
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| T |
38942813 |
tcattgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagttttttaggtacaagtagattcaggaaagctttttgaaaagga |
38942714 |
T |
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| Q |
330 |
aaacag |
335 |
Q |
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| T |
38942713 |
aaacag |
38942708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
163 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
260 |
Q |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
261 |
ttcctgtgtgtgtagattcag |
281 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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