View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0097_low_9 (Length: 295)
Name: NF0097_low_9
Description: NF0097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0097_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 43058082 - 43057910
Alignment:
| Q |
33 |
aataagattttgaaagcaaattccacaaaaaatacaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttca |
132 |
Q |
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| T |
43058082 |
aataatattttaagagcaaattccacaaaaaatacaaaaatgctcaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttca |
43057983 |
T |
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| Q |
133 |
ttttaatttatttatgacttaaaatgacccagttaatatttatgtaattaaaattgtttatgaaaagtcacatta |
207 |
Q |
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| T |
43057982 |
ttttaatttttttatgacttaaaatgacccagttaatatttaggtaatt--aattgtttatgaaaagtcacatta |
43057910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 43056685 - 43056649
Alignment:
| Q |
231 |
taaatcacctaagcctgggttttattatgtcttatct |
267 |
Q |
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| T |
43056685 |
taaatcacctaagcctgggttttattatgtcttatct |
43056649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 17648963 - 17648900
Alignment:
| Q |
95 |
tttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatga |
159 |
Q |
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| T |
17648963 |
tttcgtgccaaatgtaggacagtacaaaat-gctttcattttaatttttgtatgacataaaatga |
17648900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 24905378 - 24905178
Alignment:
| Q |
66 |
acaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccagt |
165 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
24905378 |
acaaaaatgctaaagtgcacgacagtcttttttgtgccacatgcacgacagtacaaaattgctttcattttaattttttgatgacttaaaatgatccagt |
24905279 |
T |
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| Q |
166 |
taatatttatgtaattaaaattgtttatgaaaagtcacattacaactcnnnnnnngccacttctctaaatca-cctaagcctgggttttattatgtctta |
264 |
Q |
| |
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|| | |||| |||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||| |
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| T |
24905278 |
tagtgtttaggtaatt--aattgtttataaaaagtcacattacaactctttttttgccacttctctgaatcacccaaagcctgggttttattatgtctta |
24905181 |
T |
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| Q |
265 |
tct |
267 |
Q |
| |
|
||| |
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| T |
24905180 |
tct |
24905178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 31808126 - 31808267
Alignment:
| Q |
67 |
caaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccagtt |
166 |
Q |
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|||||||||||||||| |||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
31808126 |
caaaaatgctaaagtgtacgatagtctttttcatgccacatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatcccgtt |
31808225 |
T |
|
| Q |
167 |
aatatttatgtaattaaaattgtttatgaaaagtcacattacaa |
210 |
Q |
| |
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| | |||| |||||| ||||||||||||||||||||||||||| |
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| T |
31808226 |
agtgtttaggtaatt--aattgtttatgaaaagtcacattacaa |
31808267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 65 - 267
Target Start/End: Complemental strand, 21182861 - 21182660
Alignment:
| Q |
65 |
tacaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccag |
164 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
21182861 |
tacaaaaatgctaaagtgcacgacagtctttttcgtgtcaaatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatccgg |
21182762 |
T |
|
| Q |
165 |
ttaatatttatgtaattaaaattgtttatgaaaagtcacattacaactc-nnnnnnngccacttctctaaatcacctaagcctgggttttattatgtctt |
263 |
Q |
| |
|
||| | |||| |||||| ||||||||||||||||||| |||||||||| ||||||| ||| ||||||| || |||||| ||||||||||||| |
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| T |
21182761 |
ttagtgtttaggtaatt--aattgtttatgaaaagtcaaattacaactcttttttttgccacttatctgaatcacccaaacctgggctttattatgtctt |
21182664 |
T |
|
| Q |
264 |
atct |
267 |
Q |
| |
|
|||| |
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| T |
21182663 |
atct |
21182660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 32988498 - 32988570
Alignment:
| Q |
69 |
aaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaattt |
141 |
Q |
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|||||||| |||||||||| | | |||||||||||| |||||||||||| | ||| |||||| ||||||||| |
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| T |
32988498 |
aaaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaattt |
32988570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 16220264 - 16220193
Alignment:
| Q |
70 |
aaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaattt |
141 |
Q |
| |
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||||||| |||||||||| | | |||||||||||| |||||||||||| | ||| |||||| ||||||||| |
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| T |
16220264 |
aaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgctaaactgcttttcttttaattt |
16220193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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