View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0098_high_1 (Length: 467)

Name: NF0098_high_1
Description: NF0098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0098_high_1
NF0098_high_1
[»] chr4 (4 HSPs)
chr4 (37-455)||(23819610-23820030)
chr4 (37-297)||(23832707-23832963)
chr4 (52-282)||(23828875-23829111)
chr4 (38-297)||(23824931-23825188)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 37 - 455
Target Start/End: Original strand, 23819610 - 23820030
Alignment:
Q  37 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819610 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 23819709  T
Q  137 tgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 236  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819710 tgcattgtatctgaaaatttcctttttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 23819809  T
Q  237 agtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggtaatttaatctataacactatacaaaatcaaattatcaaca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23819810 agtcatgtcaccaccaagctaacctacggatatgcggctccagaatacttagccaccggtaatttaatcaataacactatacaaaatcaaattatcaaca 23819909  T
Q  337 aaatgaaattactatcaaattttggtgtcgataattcttaacgacagatttacaaactaatttcatgtttt--tgtctaaattactttcggttgtttatt 434  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  23819910 aaatgaaatcactatcaaattttggtgtcgataattcttaacaacagatttacaaactaatttcatgtttttctgtctaaattactttcggttgtttatt 23820009  T
Q  435 taaccttttctagtatgtttc 455  Q
    |||||||||||||||||||||    
T  23820010 taaccttttctagtatgtttc 23820030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 23832707 - 23832963
Alignment:
Q  37 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 136  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||  | |||| |||| |||||||||    
T  23832707 caaacaaaagcaatgtaccgcgatttccagacttcaaatgtcttgctagattccgtatgt--ctttttgtacacaca--tgaatatattacgtttattta 23832802  T
Q  137 tgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 236  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  23832803 tgtattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttcaaattttggcctggcaaagaacttgtccctggttgataaa 23832902  T
Q  237 agtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta 297  Q
    ||||||||  | |||||||||||||  |||||| ||||||| |||| | ||||||| ||||    
T  23832903 agtcatgtacctaccaagctaacctctggatatacggctccggaatacctagccacaggta 23832963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 52 - 282
Target Start/End: Original strand, 23828875 - 23829111
Alignment:
Q  52 taccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacaca------cataaatacattatgtttatttatgcattgta 145  Q
    ||||| |||||||| || |||||||||||||||||||| ||||||||| |||| ||||||||      ||| |||| ||||| |||||||||| ||  ||    
T  23828875 taccgcgatttcaatacctcaaatgtcttgctagattcagtatgtgtccttttctacacacaaaaacacattaatatattatatttatttatgtatcata 23828974  T
Q  146 tctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaagtcatgtc 245  Q
    |||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||| |   |||||| |  ||||| |||||||||||||||||||    
T  23828975 tctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatggttgataaaagtcatgtc 23829074  T
Q  246 accaccaagctaacctacggatatgcggctccagaat 282  Q
     ||||||||||||| ||||||||||| ||||||||||    
T  23829075 tccaccaagctaacatacggatatgcagctccagaat 23829111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 23824931 - 23825188
Alignment:
Q  38 aaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttatttat 137  Q
    |||||||| |||| ||||   |||| |||||||||||| ||||||| ||||| |||||||||  ||||||||  ||||| | || ||||||||||||||     
T  23824931 aaacaaaatcgatttaccaaaatttgaagacttcaaatatcttgctggattcggtatgtgtccatttgtacagccacatgagtaaattatgtttatttaa 23825030  T
Q  138 gcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaa 237  Q
    | |   | | ||||| |||||  | ||| ||||| ||||||||||||||| ||||| | ||||||||| |||||||||||   |||||| | ||||  ||    
T  23825031 gtaacatgtttgaaagtttcc--gctgatttgatgacagaattataatgcgaaactctttaattttgggctggcaaaggatgggtccacaggtgatcgaa 23825128  T
Q  238 gtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta 297  Q
    | | ||||  ||||  || || |||||||||||| |||||||||| | | ||||||||||    
T  23825129 gccgtgtctacaccgggcaaatctacggatatgcagctccagaatacctggccaccggta 23825188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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