View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0098_low_1 (Length: 467)

Name: NF0098_low_1
Description: NF0098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0098_low_1
NF0098_low_1
[»] chr4 (4 HSPs)
chr4 (37-455)||(23819610-23820030)
chr4 (37-297)||(23832707-23832963)
chr4 (52-282)||(23828875-23829111)
chr4 (38-297)||(23824931-23825188)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 37 - 455
Target Start/End: Original strand, 23819610 - 23820030
Alignment:
Q  37 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819610 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 23819709  T
Q  137 tgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 236  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819710 tgcattgtatctgaaaatttcctttttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 23819809  T
Q  237 agtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggtaatttaatctataacactatacaaaatcaaattatcaaca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23819810 agtcatgtcaccaccaagctaacctacggatatgcggctccagaatacttagccaccggtaatttaatcaataacactatacaaaatcaaattatcaaca 23819909  T
Q  337 aaatgaaattactatcaaattttggtgtcgataattcttaacgacagatttacaaactaatttcatgtttt--tgtctaaattactttcggttgtttatt 434  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  23819910 aaatgaaatcactatcaaattttggtgtcgataattcttaacaacagatttacaaactaatttcatgtttttctgtctaaattactttcggttgtttatt 23820009  T
Q  435 taaccttttctagtatgtttc 455  Q
    |||||||||||||||||||||    
T  23820010 taaccttttctagtatgtttc 23820030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 23832707 - 23832963
Alignment:
Q  37 caaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttattta 136  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||  | |||| |||| |||||||||    
T  23832707 caaacaaaagcaatgtaccgcgatttccagacttcaaatgtcttgctagattccgtatgt--ctttttgtacacaca--tgaatatattacgtttattta 23832802  T
Q  137 tgcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaa 236  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||    
T  23832803 tgtattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttcaaattttggcctggcaaagaacttgtccctggttgataaa 23832902  T
Q  237 agtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta 297  Q
    ||||||||  | |||||||||||||  |||||| ||||||| |||| | ||||||| ||||    
T  23832903 agtcatgtacctaccaagctaacctctggatatacggctccggaatacctagccacaggta 23832963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 52 - 282
Target Start/End: Original strand, 23828875 - 23829111
Alignment:
Q  52 taccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacaca------cataaatacattatgtttatttatgcattgta 145  Q
    ||||| |||||||| || |||||||||||||||||||| ||||||||| |||| ||||||||      ||| |||| ||||| |||||||||| ||  ||    
T  23828875 taccgcgatttcaatacctcaaatgtcttgctagattcagtatgtgtccttttctacacacaaaaacacattaatatattatatttatttatgtatcata 23828974  T
Q  146 tctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaagtcatgtc 245  Q
    |||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||| |   |||||| |  ||||| |||||||||||||||||||    
T  23828975 tctgaaaatttccttgctggtttgatcgcagaattataatgcaaaactttctaattttgggcattcaaagggcgggtccatggttgataaaagtcatgtc 23829074  T
Q  246 accaccaagctaacctacggatatgcggctccagaat 282  Q
     ||||||||||||| ||||||||||| ||||||||||    
T  23829075 tccaccaagctaacatacggatatgcagctccagaat 23829111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 23824931 - 23825188
Alignment:
Q  38 aaacaaaagcgatgtaccgtgatttcaagacttcaaatgtcttgctagattccgtatgtgtctttttgtacacacacataaatacattatgtttatttat 137  Q
    |||||||| |||| ||||   |||| |||||||||||| ||||||| ||||| |||||||||  ||||||||  ||||| | || ||||||||||||||     
T  23824931 aaacaaaatcgatttaccaaaatttgaagacttcaaatatcttgctggattcggtatgtgtccatttgtacagccacatgagtaaattatgtttatttaa 23825030  T
Q  138 gcattgtatctgaaaatttccttgttgacttgatcacagaattataatgcaaaactttctaattttggcctggcaaaggacttgtccacggttgataaaa 237  Q
    | |   | | ||||| |||||  | ||| ||||| ||||||||||||||| ||||| | ||||||||| |||||||||||   |||||| | ||||  ||    
T  23825031 gtaacatgtttgaaagtttcc--gctgatttgatgacagaattataatgcgaaactctttaattttgggctggcaaaggatgggtccacaggtgatcgaa 23825128  T
Q  238 gtcatgtcaccaccaagctaacctacggatatgcggctccagaattcttagccaccggta 297  Q
    | | ||||  ||||  || || |||||||||||| |||||||||| | | ||||||||||    
T  23825129 gccgtgtctacaccgggcaaatctacggatatgcagctccagaatacctggccaccggta 23825188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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