View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0098_low_16 (Length: 251)
Name: NF0098_low_16
Description: NF0098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0098_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 24589170 - 24589418
Alignment:
| Q |
7 |
gtgagatgaacaaataactcagtgaatccagtattggtattgttacttttctaatcatgaaattattcatgttagtatattacannnnnnnnnnnnnnnn |
106 |
Q |
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|||| |||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24589170 |
gtgaaatgaacaaatgactcagttaatccgatattgctattgttacttttctaatcatgaaattattcatgttagtatattacattttatttcttacttt |
24589269 |
T |
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| Q |
107 |
nnccattctaactttcacttccacatagtta----ttcacaatgtcaaattattttttggtaataaccacaccaataaagatagagtagtaactaagtgg |
202 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24589270 |
ttccattctaactttcacttccacatggttaggtattcacaatgtcaaattattttttggtaataaccacaccaataaagacagagtagtaactaagtgg |
24589369 |
T |
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| Q |
203 |
cctagttagttacatctacaatcaaaatttggaatttaaccttttctgt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24589370 |
cctagttagttacatctacaatcaaaatttggaatttaaccttttctgt |
24589418 |
T |
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