View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0098_low_17 (Length: 241)
Name: NF0098_low_17
Description: NF0098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0098_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 23929911 - 23929698
Alignment:
| Q |
10 |
acatcatcaaacatctctgataactctgtatcatcataatatacagctgaaaccttgttacttctcagatcttcttcatgtgaaataccaatatcattac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23929911 |
acatcatcaaacatctctgataactctgtatcatcataataaacagctgaaaccttgtttcttctcagatcttcttcatgtgaaataccaatatcattac |
23929812 |
T |
|
| Q |
110 |
aattcatcaaataacctcccttttcccctaaacctctagaacccaaaacaaaactaccctcttcattcatctgccaaacatcactcggagaaccgagaaa |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
23929811 |
aattcatcaaataacctctcttttcccctaaacctctagaacccaaaacaaaactaccctcttcattcatcttccaaacatcactcggagaaccgaaaaa |
23929712 |
T |
|
| Q |
210 |
acctcgtggatcat |
223 |
Q |
| |
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|||||| ||||||| |
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|
| T |
23929711 |
acctcgcggatcat |
23929698 |
T |
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