View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0098_low_5 (Length: 341)

Name: NF0098_low_5
Description: NF0098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0098_low_5
NF0098_low_5
[»] chr4 (15 HSPs)
chr4 (15-97)||(2176217-2176301)
chr4 (203-270)||(43176586-43176653)
chr4 (204-270)||(6092713-6092779)
chr4 (15-96)||(36838233-36838316)
chr4 (15-92)||(36839523-36839602)
chr4 (205-270)||(18884462-18884527)
chr4 (218-270)||(2449013-2449065)
chr4 (218-270)||(37296169-37296221)
chr4 (218-270)||(48806548-48806600)
chr4 (203-270)||(11565914-11565981)
chr4 (218-269)||(37855896-37855947)
chr4 (203-270)||(48807344-48807411)
chr4 (218-270)||(43175770-43175822)
chr4 (231-270)||(2449570-2449609)
chr4 (231-270)||(37856702-37856741)
[»] chr3 (18 HSPs)
chr3 (203-270)||(51755808-51755875)
chr3 (203-270)||(6143719-6143786)
chr3 (203-270)||(7941158-7941225)
chr3 (211-270)||(7941964-7942023)
chr3 (203-270)||(20485489-20485556)
chr3 (205-270)||(45076207-45076272)
chr3 (203-270)||(4274908-4274975)
chr3 (203-270)||(45075394-45075461)
chr3 (218-270)||(32593070-32593122)
chr3 (218-270)||(32743244-32743296)
chr3 (203-270)||(11270242-11270309)
chr3 (203-270)||(20484680-20484747)
chr3 (211-270)||(30294830-30294889)
chr3 (223-270)||(32592285-32592332)
chr3 (203-268)||(10658871-10658936)
chr3 (203-268)||(31890202-31890267)
chr3 (203-268)||(14043858-14043923)
chr3 (218-270)||(39999537-39999589)
[»] chr2 (16 HSPs)
chr2 (203-270)||(37294377-37294444)
chr2 (203-270)||(29407020-29407088)
chr2 (203-270)||(28419455-28419522)
chr2 (203-270)||(29407845-29407912)
chr2 (203-270)||(33222664-33222731)
chr2 (223-270)||(1728832-1728879)
chr2 (203-270)||(28139514-28139581)
chr2 (218-270)||(6232702-6232754)
chr2 (223-270)||(12252450-12252497)
chr2 (203-270)||(28138628-28138695)
chr2 (218-270)||(14002556-14002608)
chr2 (206-270)||(16544422-16544486)
chr2 (218-270)||(37322095-37322147)
chr2 (224-270)||(23266187-23266233)
chr2 (203-264)||(30271122-30271183)
chr2 (203-264)||(30273114-30273175)
[»] chr8 (23 HSPs)
chr8 (203-270)||(13783066-13783133)
chr8 (203-270)||(34892767-34892834)
chr8 (203-270)||(7121744-7121811)
chr8 (211-270)||(16940234-16940293)
chr8 (203-270)||(40740954-40741021)
chr8 (204-270)||(39207685-39207751)
chr8 (203-263)||(13782283-13782343)
chr8 (218-270)||(36345889-36345941)
chr8 (218-270)||(36595904-36595956)
chr8 (211-270)||(3086389-3086448)
chr8 (231-270)||(35206618-35206657)
chr8 (203-270)||(37656764-37656831)
chr8 (213-270)||(41471994-41472051)
chr8 (218-270)||(22961462-22961514)
chr8 (230-270)||(29034124-29034164)
chr8 (218-270)||(37655974-37656026)
chr8 (218-270)||(38134096-38134148)
chr8 (231-270)||(39512389-39512428)
chr8 (228-270)||(16939453-16939495)
chr8 (203-264)||(3641694-3641755)
chr8 (209-270)||(35205868-35205929)
chr8 (230-267)||(39513174-39513211)
chr8 (218-270)||(3085578-3085630)
[»] chr6 (5 HSPs)
chr6 (203-270)||(15546347-15546414)
chr6 (203-270)||(35096686-35096753)
chr6 (203-270)||(17338722-17338789)
chr6 (230-270)||(11159389-11159429)
chr6 (218-270)||(11157799-11157851)
[»] chr5 (11 HSPs)
chr5 (203-270)||(42912836-42912903)
chr5 (203-270)||(2169735-2169802)
chr5 (218-270)||(40789165-40789217)
chr5 (203-270)||(30192540-30192607)
chr5 (211-269)||(41623007-41623065)
chr5 (203-268)||(30966604-30966669)
chr5 (218-270)||(41622210-41622262)
chr5 (231-270)||(35282352-35282391)
chr5 (203-270)||(35671130-35671197)
chr5 (224-268)||(30966158-30966202)
chr5 (218-270)||(35671989-35672041)
[»] chr1 (10 HSPs)
chr1 (203-270)||(18609853-18609920)
chr1 (203-270)||(41908990-41909057)
chr1 (203-270)||(21268724-21268791)
chr1 (203-269)||(12628094-12628160)
chr1 (218-270)||(12627276-12627328)
chr1 (203-270)||(13761002-13761069)
chr1 (223-270)||(21699943-21699990)
chr1 (203-270)||(5329972-5330039)
chr1 (218-270)||(5329160-5329212)
chr1 (231-267)||(42290346-42290382)
[»] chr7 (15 HSPs)
chr7 (218-270)||(38555127-38555179)
chr7 (203-270)||(13645300-13645367)
chr7 (203-270)||(14102306-14102373)
chr7 (203-270)||(14412323-14412390)
chr7 (203-270)||(38555371-38555438)
chr7 (203-270)||(11886007-11886073)
chr7 (203-270)||(13644469-13644536)
chr7 (205-270)||(47751143-47751208)
chr7 (218-270)||(30845988-30846040)
chr7 (218-270)||(31512997-31513049)
chr7 (223-270)||(14101490-14101537)
chr7 (223-270)||(14411507-14411554)
chr7 (203-270)||(48001333-48001400)
chr7 (237-270)||(30846784-30846817)
chr7 (272-308)||(41693636-41693672)
[»] scaffold0092 (1 HSPs)
scaffold0092 (203-270)||(54613-54680)
[»] scaffold1379 (1 HSPs)
scaffold1379 (203-264)||(398-459)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 2176217 - 2176301
Alignment:
Q  15 tgttgccgaaagtaatt-attaagcatcaatgcttgcaattaccgttcttcac-attcggtccttgcattcgtatgctcctacat 97  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  2176217 tgttgccgaaagtaatttattaagcatcaatgcttgcaattaccgttctttactatacggtccttgcattcgtatgctcctacat 2176301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 43176653 - 43176586
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| | |||| |||||| ||||||||||||||||||| ||||||||||||||    
T  43176653 ggaaaacttcggcagttaactaccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 43176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 6092779 - 6092713
Alignment:
Q  204 gaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| |||| || ||||||||||||||| |||||||||||||| ||||||| ||||||    
T  6092779 gaaaacttcggcagttaactgtcgaagaattttaaacttgaaattaaataaggaaatacatctaaat 6092713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 36838233 - 36838316
Alignment:
Q  15 tgttgccgaaagtaattattaagcatcaatgcttgcaattaccgttctt---cacattcggtccttgcattcgtatgctcctaca 96  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||   | ||| |||| ||||||||||||||||| ||||    
T  36838233 tgttgctgaaagtaatgattaagcatcaatgcttgcaatta-cgttcttctacccatacggttcttgcattcgtatgctcttaca 36838316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 36839523 - 36839602
Alignment:
Q  15 tgttgccgaaagtaattattaagcatcaatgcttgcaattaccgttcttc---acattcggtccttgcattcgtatgctcc 92  Q
    ||||||| |||||||| |||||||||||||||||||||||||| ||||||    ||| |||| ||||||||||||||||||    
T  36839523 tgttgccaaaagtaatgattaagcatcaatgcttgcaattacc-ttcttctatccatacggttcttgcattcgtatgctcc 36839602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 18884527 - 18884462
Alignment:
Q  205 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| |||||| |||| |||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  18884527 aaaacttcggcagttaactgccgaggaatttcaaacctaaaattaaataaggaaatacacctaaat 18884462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 2449013 - 2449065
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  2449013 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 2449065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 37296221 - 37296169
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  37296221 ttaattgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 37296169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 48806548 - 48806600
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  48806548 ttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaat 48806600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 11565914 - 11565981
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| ||| || |||| || ||| |||||||||||||||||||||||||| |||||| |||||||    
T  11565914 ggaaaacttcgacagttaactgtcgaggaattttaaacctgaaattaaataagaaaatacgcctaaat 11565981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 37855896 - 37855947
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaa 269  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||||||    
T  37855896 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaa 37855947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 48807411 - 48807344
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||| || |||||| |||||| |||||||||||| ||||||||||||||    
T  48807411 ggaaaacttcggcagttaactgctgatgaatttcaaaccttaaattaaataaggaaatacacctaaat 48807344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 43175770 - 43175822
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||||||  ||||| ||||||||||||||||||| ||||||||||||||    
T  43175770 ttaactgccgagtaatttcaaacctgaaattaaataagaaaatacacctaaat 43175822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 2449609 - 2449570
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  2449609 aatttcaaacctgaaattaaataaggaaatacacctaaat 2449570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 37856741 - 37856702
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  37856741 aatttcaaacctgaaattaaataaggaaatacacctaaat 37856702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 51755875 - 51755808
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  51755875 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaat 51755808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 6143719 - 6143786
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||||||||||||||||||||||| || |||||||||||    
T  6143719 ggaaaacttcggcagttaactgccgaggaattttaaacctgaaattaaataaggaactacacctaaat 6143786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 7941158 - 7941225
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  7941158 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 7941225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 7942023 - 7941964
Alignment:
Q  211 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  7942023 tcggcagttaaatgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaat 7941964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 20485556 - 20485489
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  20485556 ggaaaacttcggcaattaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 20485489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 45076272 - 45076207
Alignment:
Q  205 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  45076272 aaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 45076207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 4274975 - 4274908
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||| | |||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  4274975 ggaaaacttcggtagttaactgccgaaaaatttcaaacctgaaattaaataaggaaatacacctaaat 4274908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 45075394 - 45075461
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| | |||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  45075394 ggaaaactttggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 45075461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 32593122 - 32593070
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  32593122 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 32593070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 32743244 - 32743296
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  32743244 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 32743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 11270309 - 11270242
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||  ||||| |||||| |||||||||||| ||||||||||||||    
T  11270309 ggaaaacttcggcagttaactgccgagaaatttcaaacctaaaattaaataaggaaatacacctaaat 11270242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 20484680 - 20484747
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||  ||||||||| | ||||||||||||| ||||||||||||||    
T  20484680 ggaaaacttcggcagttaactgccgattaattttaaatcagaaattaaataaggaaatacacctaaat 20484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 30294889 - 30294830
Alignment:
Q  211 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| |||| |||||||||    
T  30294889 tcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatgcacctaaat 30294830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 32592285 - 32592332
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  32592285 tgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 32592332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 10658871 - 10658936
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaa 268  Q
    ||||||| | |||| |||| |||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  10658871 ggaaaactttggcagttaactgccgaggaatttcaaatctgaaattaaataaggaaatacacctaa 10658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 31890267 - 31890202
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaa 268  Q
    ||||||| |||||| |||| |||||| ||| || ||||||||||||||||||| || |||||||||    
T  31890267 ggaaaacttcggcagttaactgccgatgaacttaaaacctgaaattaaataaggaagtacacctaa 31890202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 14043923 - 14043858
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaa 268  Q
    ||||||| |||||| |||| ||||||  ||||| || |||||||||||||||| ||||||| ||||    
T  14043923 ggaaaacttcggcagttaactgccgagaaatttcaagcctgaaattaaataaggaaatacatctaa 14043858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 39999589 - 39999537
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| ||| || |||||| |||||||||||| ||||||||||||||    
T  39999589 ttaactgccgaggaaattcaaaccttaaattaaataagaaaatacacctaaat 39999537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 37294377 - 37294444
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  37294377 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaat 37294444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 29407020 - 29407088
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaa-cctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  29407020 ggaaaacttcggcagttaactgccgaagaatttcaaaacctgaaattaaataagtaaatacacctaaat 29407088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 28419455 - 28419522
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  28419455 ggaaaacttcggcagttaactgccgatgaatttcaaacctgaaattaaataaggaaatacacctaaat 28419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 29407912 - 29407845
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  29407912 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 29407845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 33222664 - 33222731
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  33222664 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 33222731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 1728832 - 1728879
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  1728832 tgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaat 1728879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 28139581 - 28139514
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||| || |||||| ||||||||||||||||||| ||||||||||||||    
T  28139581 ggaaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 28139514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 6232702 - 6232754
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  6232702 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 6232754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 12252497 - 12252450
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  12252497 tgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 12252450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 28138628 - 28138695
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||| || |||||||||||| ||||||||||||||    
T  28138628 ggaaaacttcggcagttaactgccgaggaatttcaaatctaaaattaaataagaaaatacacctaaat 28138695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 14002556 - 14002608
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||| ||||||||||||| ||||||||||||||    
T  14002556 ttaactgccgaggaatttcaaaccagaaattaaataaggaaatacacctaaat 14002608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 16544422 - 16544486
Alignment:
Q  206 aaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||||||  ||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  16544422 aaacttcggcagctaactgccgaggaatttcaaacatgaaattaaataaggaaatacacctaaat 16544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 37322147 - 37322095
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||| ||||||||||||||| ||||||||||||||    
T  37322147 ttaactgccgaggaatttcaaatctgaaattaaataaggaaatacacctaaat 37322095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 23266233 - 23266187
Alignment:
Q  224 gccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  23266233 gccgaggaatttcaaacctgaaattaaataaggaaatacacttaaat 23266187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 30271122 - 30271183
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 264  Q
    ||||||| |||| | |||| || ||||||| || ||||||||||||||||||| ||||||||    
T  30271122 ggaaaacttcggtagttaactgtcgaagaacttaaaacctgaaattaaataaggaaatacac 30271183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 30273175 - 30273114
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 264  Q
    |||||||||||| | |||| |||||| ||| || |||||| |||||||||||| ||||||||    
T  30273175 ggaaaacctcggtagttaattgccgaggaacttaaaacctaaaattaaataaggaaatacac 30273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 13783133 - 13783066
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| || |||||||||| ||||||||||||||||||| ||||||||||||||    
T  13783133 ggaaaacttcggcagttaactgtcgaagaatttcaaacctgaaattaaataaggaaatacacctaaat 13783066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 34892834 - 34892767
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  34892834 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 34892767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 7121811 - 7121744
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||| ||||||||| ||||||||||||||    
T  7121811 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaacttaaataaggaaatacacctaaat 7121744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 16940293 - 16940234
Alignment:
Q  211 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  16940293 tcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 16940234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 40740954 - 40741021
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| || ||| ||||||||||||||||||| ||||||||||||||    
T  40740954 ggaaaacttcggcagttaactgccgaggattttcaaacctgaaattaaataaggaaatacacctaaat 40741021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 39207685 - 39207751
Alignment:
Q  204 gaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| ||| || |||| |||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  39207685 gaaaacttcgacagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacctaaat 39207751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 13782283 - 13782343
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaataca 263  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| |||||||    
T  13782283 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaataca 13782343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 36345941 - 36345889
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  36345941 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 36345889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 36595956 - 36595904
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  36595956 ttaactgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaat 36595904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 3086448 - 3086389
Alignment:
Q  211 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  3086448 tcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaat 3086389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 35206657 - 35206618
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  35206657 aattttaaacctgaaattaaataaggaaatacacctaaat 35206618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 37656831 - 37656764
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||| | |||||| |||| |||||||||||||| ||||||||||||||    
T  37656831 ggaaaacttcggcagttaactgccaaggaatttcaaacatgaaattaaataaggaaatacacctaaat 37656764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 41472051 - 41471994
Alignment:
Q  213 ggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||| |||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  41472051 ggcagttaactgccgaggaatttcaaaccttaaattaaataaggaaatacacctaaat 41471994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 22961514 - 22961462
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||| ||||| ||||||||||||||    
T  22961514 ttaactgccgaggaatttcaaacctgaaattacataaggaaatacacctaaat 22961462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 29034124 - 29034164
Alignment:
Q  230 gaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  29034124 gaatttcaaacctgaaattaaataaggaaatacacctaaat 29034164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 37655974 - 37656026
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  37655974 ttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaat 37656026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 38134148 - 38134096
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  38134148 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacataaat 38134096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 39512389 - 39512428
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  39512389 aattttaaacctgaaattaaataaggaaatacatctaaat 39512428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 16939453 - 16939495
Alignment:
Q  228 aagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||    
T  16939453 aagaatttcaaacctgaaattaaataaggaaatacaactaaat 16939495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 3641694 - 3641755
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 264  Q
    |||||||||||| | |||| |||||| ||| || |||| |||||||||||||| ||||||||    
T  3641694 ggaaaacctcgggaattaactgccgatgaacttaaaacttgaaattaaataaggaaatacac 3641755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 35205868 - 35205929
Alignment:
Q  209 cctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||| |||| |||||| |||||| |||| | |||||||||||| ||||||||||||||    
T  35205868 cctcagcagttaactgccgaggaatttcaaacttaaaattaaataaggaaatacacctaaat 35205929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 39513211 - 39513174
Alignment:
Q  230 gaattttaaacctgaaattaaataagtaaatacaccta 267  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  39513211 gaatttcaaacctgaaattaaataaggaaatacaccta 39513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 3085578 - 3085630
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| || | |||||||||||||| ||||||||||||||    
T  3085578 ttaactgccgaggaatttcaaccttgaaattaaataaggaaatacacctaaat 3085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 15546414 - 15546347
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  15546414 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 15546347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 35096686 - 35096753
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  35096686 ggaaaacttcggcagttaactgccgaagaatttcaaacctaaaattaaataagaaaatacacctaaat 35096753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 17338789 - 17338722
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  17338789 ggaaaacttcggcaattaactgccgagaaattttaaatctgaaattaaataagaaaatacacctaaat 17338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 11159429 - 11159389
Alignment:
Q  230 gaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  11159429 gaattttaaacctgaaattaaataaggaaatacacctaaat 11159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 11157799 - 11157851
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| |||| |||||||||    
T  11157799 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatgcacctaaat 11157851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 42912903 - 42912836
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  42912903 ggaaaacttcggcagttaactgccgaagaatttcaaacctgaaactaaataaggaaatacacctaaat 42912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 2169735 - 2169802
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| | ||||||||||| |||||| |||||||||||| ||||||||||||||    
T  2169735 ggaaaacttcggcagttaactaccgaagaatttcaaacctaaaattaaataagaaaatacacctaaat 2169802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 40789217 - 40789165
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  40789217 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 40789165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 30192540 - 30192607
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||| ||| ||||    
T  30192540 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatataccaaaat 30192607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 41623065 - 41623007
Alignment:
Q  211 tcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaa 269  Q
    |||||| |||| || |||||||||| ||||||||||||||||||| ||||||| |||||    
T  41623065 tcggcagttaactgtcgaagaatttcaaacctgaaattaaataagaaaatacatctaaa 41623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 30966669 - 30966604
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaa 268  Q
    ||||||| |||||| |||| |||||| ||| || |||||| |||||||||||| ||||||||||||    
T  30966669 ggaaaacttcggcagttaactgccgaggaacttaaaaccttaaattaaataagaaaatacacctaa 30966604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 41622210 - 41622262
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||||||  ||||| ||||||||||||||||||| ||||||||||||||    
T  41622210 ttaactgccgagtaatttcaaacctgaaattaaataaggaaatacacctaaat 41622262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 35282391 - 35282352
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  35282391 aatttcaaacctgaaattaaataaggaaatacacctaaat 35282352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 35671130 - 35671197
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| | |||| |||| |||||| |||||| |||| |||| ||||||||| ||||||||||||||    
T  35671130 ggaaaactttggcagttaactgccgaggaatttcaaacatgaacttaaataaggaaatacacctaaat 35671197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 30966158 - 30966202
Alignment:
Q  224 gccgaagaattttaaacctgaaattaaataagtaaatacacctaa 268  Q
    ||||| ||| || ||||||||||||||||||| ||||||||||||    
T  30966158 gccgaggaacttaaaacctgaaattaaataaggaaatacacctaa 30966202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 35672041 - 35671989
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||||||  ||||| ||| ||||||||||||||| ||||||||||||||    
T  35672041 ttaagtgccgagtaatttcaaagctgaaattaaataaggaaatacacctaaat 35671989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 18609920 - 18609853
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  18609920 ggaaaacttcggcagttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 18609853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 41908990 - 41909057
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  41908990 ggaaaacttcggcagttaactgttgaagaattttaaacctgaaattaaataaggaaatacacctaaat 41909057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 21268791 - 21268724
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||| || |||||| ||||||||||||||||||| ||||||||||||||    
T  21268791 ggaaaacttcggcagttaactgctgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 21268724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 12628160 - 12628094
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaa 269  Q
    ||||||| |||||| |||| || ||| |||||| ||||||||||||||||||| |||||||||||||    
T  12628160 ggaaaacttcggcagttaactgtcgaggaatttcaaacctgaaattaaataaggaaatacacctaaa 12628094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 12627276 - 12627328
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  12627276 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacctaaat 12627328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 13761069 - 13761002
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| ||| || |||| |||||| |||||| |||||| |||||||||||| ||||||||||||||    
T  13761069 ggaaaacttcgacagttaactgccgacgaatttcaaaccttaaattaaataaggaaatacacctaaat 13761002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 21699943 - 21699990
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  21699943 tgccgaggaatttcaaacctgaaattaaataagaaaatacacctaaat 21699990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 5330039 - 5329972
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| ||| || |||| || ||| |||||| |||||| |||||||||||| ||||||||||||||    
T  5330039 ggaaaacttcgacagttaactgtcgatgaatttcaaacctaaaattaaataaggaaatacacctaaat 5329972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 5329160 - 5329212
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| ||||||  || ||||||||||||||| ||||||||||||||    
T  5329160 ttaactgccgaggaatttcgaatctgaaattaaataaggaaatacacctaaat 5329212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 42290346 - 42290382
Alignment:
Q  231 aattttaaacctgaaattaaataagtaaatacaccta 267  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  42290346 aatttcaaacctgaaattaaataaggaaatacaccta 42290382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 38555127 - 38555179
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  38555127 ttaactgccgaagaatttcaaacctgaaattaaataaggaaatacacctaaat 38555179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 13645367 - 13645300
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| | |||| |||| |||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  13645367 ggaaaacttaggcagttaactgccgaggaattttaaatctgaaattaaataaggaaatacacctaaat 13645300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 14102373 - 14102306
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  14102373 ggaaaacttcggcagttaactgccgaggaatttcaaacatgaaattaaataaggaaatacacctaaat 14102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 14412390 - 14412323
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  14412390 ggaaaacttcggcagttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaat 14412323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 38555438 - 38555371
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| ||||||| ||||| |||||| |||||||||||| ||||||||||||||    
T  38555438 ggaaaacttcggcagttaactgccgaaaaatttcaaacctaaaattaaataaggaaatacacctaaat 38555371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 11886007 - 11886073
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| |||| || ||| |||||| ||||||||||||||||||| ||||||||||||||    
T  11886007 ggaaaacttcggca-ttaactgtcgaggaatttcaaacctgaaattaaataagaaaatacacctaaat 11886073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 13644469 - 13644536
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| |||||| ||||  ||| |||||||| ||| ||||||||||||||| ||||||||||||||    
T  13644469 ggaaaacttcggcagttaaccgccaaagaatttcaaatctgaaattaaataaggaaatacacctaaat 13644536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 47751208 - 47751143
Alignment:
Q  205 aaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||| ||| || |||| ||| || |||||| ||||||||||||||||||| ||||||||||||||    
T  47751208 aaaacttcgtcagttaactgcggaggaatttcaaacctgaaattaaataaggaaatacacctaaat 47751143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 30845988 - 30846040
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  30845988 ttaactgccgaggaatttcaaacctgaaattaaataaggaaatacacataaat 30846040  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 31513049 - 31512997
Alignment:
Q  218 ttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||| |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  31513049 ttaactgccgaggaatttcaaacttgaaattaaataaggaaatacacctaaat 31512997  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 14101490 - 14101537
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  14101490 tgccgaggaatttcaaacgtgaaattaaataagaaaatacacctaaat 14101537  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 14411507 - 14411554
Alignment:
Q  223 tgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    |||||| |||||| |||| |||||||||||||| ||||||||||||||    
T  14411507 tgccgaggaatttcaaacgtgaaattaaataagaaaatacacctaaat 14411554  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 48001400 - 48001333
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| || ||| |||| |||||| |||||| ||||||||||||||||||  |||||||| |||||    
T  48001400 ggaaaacttcagcaattaactgccgaggaatttcaaacctgaaattaaataaagaaatacacttaaat 48001333  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 30846817 - 30846784
Alignment:
Q  237 aaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||||||||||||||| ||||||||||||||    
T  30846817 aaacctgaaattaaataaggaaatacacctaaat 30846784  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 41693636 - 41693672
Alignment:
Q  272 taaattaaaggctaagatatgtttttcatccctgcaa 308  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  41693636 taaattaaaggctaaaatatgtttttgatccctgcaa 41693672  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 54613 - 54680
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacacctaaat 270  Q
    ||||||| ||| || |||| |||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  54613 ggaaaacatcgacagttaactgccgaggaattttaaatatgaaattaaataaggaaatacacctaaat 54680  T

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Target: scaffold1379 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 459 - 398
Alignment:
Q  203 ggaaaacctcggcacttaaatgccgaagaattttaaacctgaaattaaataagtaaatacac 264  Q
    |||||||||||| | |||| | |||| ||| || ||||||||||||||||||| ||||||||    
T  459 ggaaaacctcgggagttaactaccgaggaacttaaaacctgaaattaaataaggaaatacac 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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