View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0099-INSERTION-1 (Length: 694)
Name: NF0099-INSERTION-1
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0099-INSERTION-1 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Complemental strand, 17850198 - 17849640
Alignment:
| Q |
7 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17850198 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctataatctgaactcctttga |
17850099 |
T |
|
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactg |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17850098 |
tggaaatggacttcgacatctttcctctcttgaaagtcttgactttcttaactgtcaacaacttgagtcattgccacaaaactgcctcccttcctcactg |
17849999 |
T |
|
| Q |
207 |
aaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17849998 |
aaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatat |
17849899 |
T |
|
| Q |
307 |
tagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtgacaatatgagccacggcggagtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
|
|
| T |
17849898 |
tagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatatgagccacggtagag-t |
17849800 |
T |
|
| Q |
407 |
aagagaaggaagagttgcattgtcattcctgtttcaggtatgcttttcgtttacatctctattataatataagtggattgattaataagaatctacatta |
506 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||| || ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17849799 |
aagagaaggaagagctgctttgccgttcctattcaaggtacacttttcttttacatctctactataacataagtggattgattaataagaatctacatta |
17849700 |
T |
|
| Q |
507 |
tttattattggttctaaatattagcatgttgattgagtaacataatatccttcctaagatact |
569 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||||||| |||||| ||||||||||||| |
|
|
| T |
17849699 |
tttattattggttctaaatactagcgtgctgcttgagtaaaataata---ttcctaagatact |
17849640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 630 - 693
Target Start/End: Complemental strand, 17849285 - 17849222
Alignment:
| Q |
630 |
ttttgctatgaaatgtgcttgattatgaaccaaactagtcacttgttgatattgtgtaactact |
693 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17849285 |
ttttggtatgaaattggcttgattatgaatcaaactagtcacttgttgatattgtgtaactact |
17849222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 57 - 396
Target Start/End: Complemental strand, 44954885 - 44954546
Alignment:
| Q |
57 |
tccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatggaaatgggcttcgacatctt-tcctctcttgaaagtcttgaatttctt |
155 |
Q |
| |
|
||||| ||||||||||||||| || |||| || | |||| |||||| | ||||||||||||| ||| || |||||||| |||| ||| | |||| | |
|
|
| T |
44954885 |
tcccttgtgtctctgactatcagttatctggatgaaatgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatctccactttcgt |
44954786 |
T |
|
| Q |
156 |
aactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaag |
255 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||| || |||||||| |||||||| ||| |||||| | |||| || ||||||||||||||||||||| |
|
|
| T |
44954785 |
aactgtcaacagcttgagtcatttccagaaaactgtcttccttcctcgctgaaatcacttcaatttttgttttgtgaa-gacttgagtcgttaccagaag |
44954687 |
T |
|
| Q |
256 |
acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat |
355 |
Q |
| |
|
| |||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||| | || |
|
|
| T |
44954686 |
aaagcctccccaactctcttaatcgactggtcatttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaat |
44954587 |
T |
|
| Q |
356 |
ccctgtcatagaaattgaggaccaagtgacaatatgagcca |
396 |
Q |
| |
|
| |||||||||||| || | |||||| ||||||||||||| |
|
|
| T |
44954586 |
tcatgtcatagaaatagatggccaagtcacaatatgagcca |
44954546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 11487827 - 11487893
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatc |
77 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||||||||| || || ||||| ||||||||||||||| |
|
|
| T |
11487827 |
tgatgatatacttaacaccttgatgaagcagtcgttgctacccatctcccttgtgtctctgactatc |
11487893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 11488217 - 11488250
Alignment:
| Q |
337 |
ggtccaaaattgctcacatccctgtcatagaaat |
370 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
11488217 |
ggtccaaaattgctcacatccctgtcaaagaaat |
11488250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 9841656 - 9842010
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| || || ||||| |||||||| | |||| | |||||| | | |||| |||||||||||| |
|
|
| T |
9841656 |
tgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtctctaaatatcagggatctctctgaaatgaagtcctttgatgga |
9841755 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| || ||| |||| ||| ||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
9841756 |
aatgggcttcgacacctctcctctctccaatatctcgatttttcgttttgtccacagcttgagtcattgccagaaaactgcctcccttcctcgctgaaat |
9841855 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| ||| | | | ||| ||| |||||||| ||||||||||||||||||||| ||||||| |||| ||| ||||||| |||| || | ||||| |
|
|
| T |
9841856 |
cacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaacatttggggatgtccattgttaga |
9841955 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9841956 |
agaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcata |
9842010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 10361072 - 10360691
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| || | ||||| ||||||||| ||| |||||||| | | |||| |||||||||||| |
|
|
| T |
10361072 |
tgatgatatagttaacaccttgatgaaggagtcattgctacccgtctcccttgtgtctctggaaatccatcatctctctgaaatgaagtcctttgatgga |
10360973 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| | |||| || | |||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10360972 |
aatgggcttcgacacctctcctctctccaacatctcgtattttttgaatgtcgacagcttgagtcattaccagaaaactgcctcccttcctcgctgaaat |
10360873 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| ||||| | |||| ||| ||| | || ||||||||||||||||||||| |||||||||| ||||| ||| | ||||| | ||||| |
|
|
| T |
10360872 |
cacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaactggacatctatgattgcccattgttaga |
10360773 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtgacaatatga |
392 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||| | |||||||| ||||||||| |
|
|
| T |
10360772 |
agaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatga |
10360691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 9980264 - 9980618
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| || || ||||| ||| ||| ||||||| |||||| | | |||| |||||||||||| |
|
|
| T |
9980264 |
tgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatgga |
9980363 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| ||| | ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
9980364 |
aatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
9980463 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| |||||||||| | ||||||||| || ||||| ||||||||||||||||||||| ||||||||| |||| ||| | ||||| | ||||| |
|
|
| T |
9980464 |
cacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttaga |
9980563 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9980564 |
agaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata |
9980618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 10034801 - 10035157
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| ||| |||| | || || || | |||| |||||||||||| |
|
|
| T |
10034801 |
tgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatctatatatcagggatttcgatgaaatgaagtcctttgatgga |
10034900 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| || |||||||| ||| ||| ||| || ||||| ||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
10034901 |
aatgggcttcgacacctctcctctctccaaactctctgtttttggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
10035000 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| ||| || ||||||||| |||||||| |||||||||||||||||| || |||||||| | ||| ||||||| ||||| | ||||| |
|
|
| T |
10035001 |
cacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgcatttggaattgcccattgttaga |
10035100 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga |
367 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10035101 |
agaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcataga |
10035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 10431312 - 10430956
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| || || ||||| |||| ||| |||| | |||||| | | |||| |||||||||||| |
|
|
| T |
10431312 |
tgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtatctatatatcactgatctctctgaaatgaagtcctttgatgga |
10431213 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtct-tgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaa |
209 |
Q |
| |
|
|||||||| ||||| || |||||||| ||| ||| || ||| | ||| | ||||||||| |||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
10431212 |
aatgggctgcgacacctctcctctctccaaactctctgtttttggttt-tgtgatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaa |
10431114 |
T |
|
| Q |
210 |
tcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattag |
309 |
Q |
| |
|
|| ||||| || || | ||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |||| ||| || ||| || | |||| |
|
|
| T |
10431113 |
tcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgagaattagggaatgtccattgttag |
10431014 |
T |
|
| Q |
310 |
aagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga |
367 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431013 |
aagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga |
10430956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 10520283 - 10520637
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| || || ||||| ||| |||| |||||| | |||||| | | |||| |||||||||||| |
|
|
| T |
10520283 |
tgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgactctaactatcagggatctctctgaaatgaagtcctttgatgga |
10520382 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|| |||||||| || || |||||||| || |||| ||| | ||| ||||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
10520383 |
aaagggcttcgtcacctctcctctctccaacgtctccgtttttgggattgtgaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
10520482 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
||||| || || | ||| ||| ||| | || ||||||||||||||||||||| |||||| ||| ||||| |||||||| ||| || | ||||| |
|
|
| T |
10520483 |
tacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctcatttgggaatgtccattgttaga |
10520582 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10520583 |
agaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcata |
10520637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 168 - 392
Target Start/End: Original strand, 9852832 - 9853056
Alignment:
| Q |
168 |
cttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccctt |
267 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || |||||||| |||||||| || | ||| ||| || ||||| ||||||||||||||||||||| |
|
|
| T |
9852832 |
cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg |
9852931 |
T |
|
| Q |
268 |
cctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga |
367 |
Q |
| |
|
||| || ||| |||||| ||||| |||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9852932 |
actcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga |
9853031 |
T |
|
| Q |
368 |
aattgaggaccaagtgacaatatga |
392 |
Q |
| |
|
||| | ||||| || ||||||||| |
|
|
| T |
9853032 |
aataaatgaccaggttacaatatga |
9853056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 11779255 - 11778894
Alignment:
| Q |
9 |
gatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatg |
108 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||| | |||||| || || ||||| ||| ||| ||||| | |||||||| | |||| ||||| |||| |
|
|
| T |
11779255 |
gatgataatatagtcaccaccttgatgaaggatttgttgctacctatctcccttgtggacctgtctatcattgatctctatgaaatgaagtccttcgatg |
11779156 |
T |
|
| Q |
109 |
gaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaa |
208 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| ||| | ||| || |||||||| || |||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
11779155 |
gaaatgggcttcgacacctctcctctctcgaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaa |
11779056 |
T |
|
| Q |
209 |
atcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatatta |
308 |
Q |
| |
|
||| ||| |||| ||| | |||||||| ||||| |||||||||||||| ||||||||||| |||| ||||||| ||||||| | ||| |
|
|
| T |
11779055 |
atcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgtta |
11778956 |
T |
|
| Q |
309 |
gaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat |
370 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11778955 |
gaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagaaat |
11778894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 10129720 - 10130068
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| ||| |||| | || || || | |||| |||||||||||| |
|
|
| T |
10129720 |
tgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatctatatatcagggatttcgatgaaatgaagtcctttgatgga |
10129819 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| || | |||||| || ||| ||| || ||||| ||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
10129820 |
aatgggcttcgacacctcttctctctccaacatctcttcttttggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
10129919 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||||| ||||| ||||| ||| || ||||| ||||||||||||||||||||| ||||||| || |||| |||| |||| || | ||||| |
|
|
| T |
10129920 |
cacttgacttttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtgcattcaaggatgtccattgttaga |
10130019 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccct |
359 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
10130020 |
agaaaggtataaaaggaaggaacattgctccaaaattgctcacatccct |
10130068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 237 - 392
Target Start/End: Complemental strand, 10372956 - 10372801
Alignment:
| Q |
237 |
cttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacatt |
336 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
10372956 |
cttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaaggaacatt |
10372857 |
T |
|
| Q |
337 |
ggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtgacaatatga |
392 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | |||||| | ||||||||| |
|
|
| T |
10372856 |
ggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatga |
10372801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 10503380 - 10503579
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| || || ||||| | ||||| |||| || |||||||| | |||| |||||||||||| |
|
|
| T |
10503380 |
tgatgatatatttaacaccttgatgaaggagtcgttgcttcccatctcccttgcatctctatatatcagtgatctctatgaaatgaagtcctttgatgga |
10503479 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| | |||||||| |||| ||||||||||||||| |||| ||| ||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
10503480 |
aatgggcttcgacaaatctcctctctcgaaaatcttgaatttcttaattgtctacagcttgagtcattgccagaaaactgcctcccttcctcgctgaaat |
10503579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 10531579 - 10531933
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||||| |||||| || |||| ||||| ||||| || || ||||| |||||||| |||| ||||||||| | | | || || ||||| ||| |
|
|
| T |
10531579 |
tgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaaataaagtcatttgaagga |
10531678 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
||||| |||||||| || |||||||| ||| |||| | |||||||| || | ||||||||||| ||| |||| |||||||||||||| ||||| | |
|
|
| T |
10531679 |
aatggacttcgacacctctcctctctcaaaaatcttcactttcttaattgcttggagcttgagtcattgccagaaaattgcctcccttcctcgctgaagt |
10531778 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| | ||| || | ||||| | ||||| |
|
|
| T |
10531779 |
cacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctcccttcctctcttaaactactcactatcgagttttgcccattgttaga |
10531878 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
10531879 |
agaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcata |
10531933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 11772030 - 11772388
Alignment:
| Q |
9 |
gatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatg |
108 |
Q |
| |
|
|||||| ||||||| | |||||||||||| |||| |||||| || || ||||| ||| ||| ||||| | |||||||| | |||| || ||||||| |
|
|
| T |
11772030 |
gatgataatatagtcaccaccttgatgaaagagttgttgctgcctatctcccttgtggacctgtctatcattgatctctatgaaatgaagtcttttgatg |
11772129 |
T |
|
| Q |
109 |
gaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaa |
208 |
Q |
| |
|
|||||||||||||||| || |||||||| || ||| | ||| || |||||||| || |||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
11772130 |
gaaatgggcttcgacacctctcctctctccaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaa |
11772229 |
T |
|
| Q |
209 |
atcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatatta |
308 |
Q |
| |
|
||| ||| |||| ||| | |||||||| ||||| |||||||||||||| ||||||||||| |||| ||||||| ||||||| | ||| |
|
|
| T |
11772230 |
atcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgtta |
11772329 |
T |
|
| Q |
309 |
gaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga |
367 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11772330 |
gaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcataga |
11772388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 172 - 365
Target Start/End: Original strand, 10666494 - 10666687
Alignment:
| Q |
172 |
agtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctc |
271 |
Q |
| |
|
||||||||||| || || ||||||||||||| |||||||| |||||||| | | | ||| ||| |||||||| ||||||||||||||||||||| ||| |
|
|
| T |
10666494 |
agtcattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactc |
10666593 |
T |
|
| Q |
272 |
tcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
||||||| |||| |||| | ||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10666594 |
tcttaaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata |
10666687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 10085970 - 10086332
Alignment:
| Q |
7 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttga |
106 |
Q |
| |
|
|||||| ||||||||| ||||||||| | || ||| ||||||| | || ||||| |||||||||| ||| || |||||||| | |||| |||||||| |
|
|
| T |
10085970 |
aggatggtgatatagttaacaccttggtaaaagagccgttgctaaccatctcccttgtgtctctgaatattggtgatctctataacatgaagtcctttga |
10086069 |
T |
|
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactg |
206 |
Q |
| |
|
|||||||||||||| ||| || |||| ||| |||| |||| | |||| ||| ||||||||||||||| |||| || |||| ||| | |||||||| ||| |
|
|
| T |
10086070 |
tggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcgttccttcctcgctg |
10086168 |
T |
|
| Q |
207 |
aaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatat |
306 |
Q |
| |
|
||||| |||||| |||| |||| |||||||||| || ||||| |||||| |||||||| ||||| ||||| ||| ||| | |||| | | |
|
|
| T |
10086169 |
aaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagcgtctgagcatcgtatttttccctttgt |
10086268 |
T |
|
| Q |
307 |
tagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat |
370 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
10086269 |
taaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaat |
10086332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 10192890 - 10193252
Alignment:
| Q |
7 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttga |
106 |
Q |
| |
|
|||||| ||||||||| ||||||||| | || ||| ||||||| || || ||||| |||||||||| ||| || |||||||| | |||| |||||||| |
|
|
| T |
10192890 |
aggatggtgatatagttaacaccttggtaaaagagccgttgctacccatctcccttgtgtctctgaatattggtgatctctataacatgaagtcctttga |
10192989 |
T |
|
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactg |
206 |
Q |
| |
|
|||||||||||||| ||| || |||| ||| |||| |||| | |||| ||| ||||||||||||||| |||| || |||| ||| | |||||||| ||| |
|
|
| T |
10192990 |
tggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcgttccttcctcgctg |
10193088 |
T |
|
| Q |
207 |
aaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatat |
306 |
Q |
| |
|
||||| |||||| |||| |||| |||||||||| || ||||| |||||| |||||||| ||||| ||||| || ||| | |||| | | |
|
|
| T |
10193089 |
aaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagcgtctaagcatcgtatttttccctttgt |
10193188 |
T |
|
| Q |
307 |
tagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat |
370 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
10193189 |
taaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaat |
10193252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 10680377 - 10680731
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||||| |||||| || |||| ||||| ||||| || || ||||| |||||||| |||| ||||||||| | | | || || |||| ||| |
|
|
| T |
10680377 |
tgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaaataaagtcacttgaagga |
10680476 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
||||| |||||||| || |||||||| ||| |||| | |||||||| || | ||||||||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
10680477 |
aatggacttcgacacctctcctctctcaaaaatcttaactttcttaattgctcggagcttgagtcatttccagaaaattgcctcccttcctcgctgaaat |
10680576 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||| || | ||||| | ||||| |
|
|
| T |
10680577 |
cacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctcccttcctctcttaaactactcactatcaagttttgcccattgttaga |
10680676 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
10680677 |
agaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata |
10680731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 168 - 364
Target Start/End: Original strand, 10091950 - 10092146
Alignment:
| Q |
168 |
cttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccctt |
267 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||| |||||||| ||| ||| || ||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
10091950 |
cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt |
10092049 |
T |
|
| Q |
268 |
cctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcat |
364 |
Q |
| |
|
| ||||||| ||| |||| | ||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10092050 |
catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat |
10092146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 168 - 364
Target Start/End: Original strand, 10198832 - 10199028
Alignment:
| Q |
168 |
cttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccctt |
267 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||| |||||||| ||| ||| || ||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
10198832 |
cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt |
10198931 |
T |
|
| Q |
268 |
cctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcat |
364 |
Q |
| |
|
| ||||||| ||| |||| | ||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10198932 |
catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat |
10199028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 10583307 - 10583571
Alignment:
| Q |
7 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttga |
106 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| || || ||||| |||| ||| |||||| |||||| | | |||| |||||||| |
|
|
| T |
10583307 |
aggatgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtatctatatatctggaatctctctgaaatgaagtcctttga |
10583406 |
T |
|
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactg |
206 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || ||| ||| | | ||||| ||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
10583407 |
tggaaatgggctgcgacacctctcctctctccaatatctctgttttttcatttgtcatcaacttgagacattgccagaaaactgcctcccttcctcactg |
10583506 |
T |
|
| Q |
207 |
aaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctc |
271 |
Q |
| |
|
||||| ||| |||| ||||| ||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
10583507 |
aaatcactttcatttatggattgtgaaaagcttgggtcattaccagaagacagcctcccttcctc |
10583571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 10503684 - 10503831
Alignment:
| Q |
246 |
ttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaa |
345 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||| ||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10503684 |
ttaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtccaaaa |
10503783 |
T |
|
| Q |
346 |
ttgctcacatccctgtcatagaaattgaggaccaagtgacaatatgag |
393 |
Q |
| |
|
|| |||||||||||||||||||||| || | ||||| |||||||||| |
|
|
| T |
10503784 |
tttctcacatccctgtcatagaaatagatggacaagtcacaatatgag |
10503831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 10263499 - 10263853
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| || || ||||| ||| ||| | ||| | |||||| | | |||| |||||||||||| |
|
|
| T |
10263499 |
tgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttttgtatctacgtgtctttgatctctctgaaatgaagtcctttgatgga |
10263598 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||| ||| || |||||||| || ||| ||| | ||||| ||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
10263599 |
aatgggcttcaacacctctcctctctccaatatctctgttttttcttttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
10263698 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| ||| ||| | ||| ||| || ||||| |||||||||||||||||||||||||||||||| | ||| | || | ||||| | ||||| |
|
|
| T |
10263699 |
cacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaactactcgctatcgagttttgcccattgttaga |
10263798 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
10263799 |
agaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcata |
10263853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 10666264 - 10666524
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| || |||||||| |||||||| || || | ||||| || |||| |||||| ||||| |
|
|
| T |
10666264 |
tgatgatatatttaacaccttgatgaaggagtcgttgctacccatatcccttgtgtctctaacgttcagagctctctgcaatttgaagtcctttaatgga |
10666363 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||| ||| || |||||||| || ||||||||||| | |||||||| || |||||||||||| |||||| ||||||||| || |||||| |
|
|
| T |
10666364 |
aatgggcttctacacctctcctctctcaaacgtcttgaatttgagtattgtcaacagctggagtcattaccagaaaactacctcccttcatctctgaaag |
10666463 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctc |
271 |
Q |
| |
|
||| | || || ||||||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10666464 |
aacttacaattcgtgattgtaagcagcttaagtcattaccagaagacagcctcccttcctc |
10666524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 168 - 370
Target Start/End: Original strand, 10583537 - 10583739
Alignment:
| Q |
168 |
cttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccctt |
267 |
Q |
| |
|
|||| |||||||||| || || ||||||||||||| |||||||| ||| ||||| |||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
10583537 |
cttgggtcattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggttgtgtaagactcgagtcattaccagaagacagcctccctg |
10583636 |
T |
|
| Q |
268 |
cctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga |
367 |
Q |
| |
|
||||||| |||||||| ||| ||||| | ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
10583637 |
actctcttgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcataca |
10583736 |
T |
|
| Q |
368 |
aat |
370 |
Q |
| |
|
||| |
|
|
| T |
10583737 |
aat |
10583739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 10373117 - 10372916
Alignment:
| Q |
7 |
aggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttga |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||| ||| |||| | |||||| | | |||| |||||||| |
|
|
| T |
10373117 |
aggatgatgatatagttaacaccttgatgaaggagtcgttgctacccatctcccttgtgcatctacgtatcaattatctctctgaaatgaagtcctttga |
10373018 |
T |
|
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactg |
206 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||| ||| | ||| |||| ||| || | ||||||||||||||| || || ||||||||||||| ||| |
|
|
| T |
10373017 |
tggaaatgggcttcgacacctctcctctctcaaaaatctctatttttttaattgtgaaaagcttgagtcattaccagaagacagcctcccttcctctctg |
10372918 |
T |
|
| Q |
207 |
aa |
208 |
Q |
| |
|
|| |
|
|
| T |
10372917 |
aa |
10372916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 9852537 - 9852747
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| || || ||||| |||||||| | |||| ||||| | | |||| |||||||||||| |
|
|
| T |
9852537 |
tgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgtctctaaatatcatggttctctctgaaatgaagtcctttgatgga |
9852636 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||||||||| || | |||||| || ||| | ||| |||||||| |||| |||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
9852637 |
aatgggcttcgacacctcttctctctccaatatctctattttgcgggttgtcaacagcttgggtcattgccagaaaactgcttcccttcctcactgaaat |
9852736 |
T |
|
| Q |
211 |
cgcttgaattt |
221 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
9852737 |
cacttaaattt |
9852747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 11242622 - 11242500
Alignment:
| Q |
233 |
aagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaa |
332 |
Q |
| |
|
||||||| |||| || |||||||||| | ||||||||||||||| |||| |||| | ||||||| | ||||||||||||||| ||| ||||||| |
|
|
| T |
11242622 |
aagacttcagtcattgccagaagacacttttccttcctctcttaaggtactgagcattaaggaatgccctgtgttagaagaaaggtatcaaaagcaggaa |
11242523 |
T |
|
| Q |
333 |
cattggtccaaaattgctcacat |
355 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
11242522 |
cattggtccaaaatagctcacat |
11242500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 10091669 - 10091784
Alignment:
| Q |
94 |
tgaactcctttgatggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttct-taactgtcaacaacttgagtcattaccacaaaactgcc |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| || |||| | |||||| | | |||| ||| ||| ||||||| ||| ||||||||| |
|
|
| T |
10091669 |
tgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcg-atttctgtcaatgtcgacagcttcagtcattgccagaaaactgcc |
10091767 |
T |
|
| Q |
193 |
tcccttcctcactgaaa |
209 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
10091768 |
tcccttcctcgctgaaa |
10091784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 10198551 - 10198666
Alignment:
| Q |
94 |
tgaactcctttgatggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttct-taactgtcaacaacttgagtcattaccacaaaactgcc |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| || |||| | |||||| | | |||| ||| ||| ||||||| ||| ||||||||| |
|
|
| T |
10198551 |
tgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcg-atttctgtcaatgtcgacagcttcagtcattgccagaaaactgcc |
10198649 |
T |
|
| Q |
193 |
tcccttcctcactgaaa |
209 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
10198650 |
tcccttcctcgctgaaa |
10198666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 11146014 - 11145946
Alignment:
| Q |
107 |
tggaaatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtc |
175 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||| ||| | ||| ||||||||||||||||||||| |
|
|
| T |
11146014 |
tggaaatgggcttcgacaactctccgctcttgaaacacttaatttttataactgtcaacaacttgagtc |
11145946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 8585578 - 8585541
Alignment:
| Q |
328 |
aggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8585578 |
aggaacattggtccaacattgctcacatacctgtcata |
8585541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 13335706 - 13335835
Alignment:
| Q |
12 |
gatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatggaa |
111 |
Q |
| |
|
|||||||| || ||||||||| |||||||| |||||| ||||| || || |||||| ||| ||| | | |||||| | | | || ||| ||||||||| |
|
|
| T |
13335706 |
gatgatattgttaacaccttgctgaaggagcggttgctgccaatttcacttgtgtctttgagtatttctaatctctgtgaaataaaatccattgatggaa |
13335805 |
T |
|
| Q |
112 |
atgggcttcgacatctttcctctcttgaaa |
141 |
Q |
| |
|
|||| || ||||| || ||||||||||||| |
|
|
| T |
13335806 |
atggactccgacacctatcctctcttgaaa |
13335835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 54873 - 54519
Alignment:
| Q |
11 |
tgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatgga |
110 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| || || ||||| ||| ||| ||||||| |||||| | | |||| |||||||||||| |
|
|
| T |
54873 |
tgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatgga |
54774 |
T |
|
| Q |
111 |
aatgggcttcgacatctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaat |
210 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||| ||| | ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
54773 |
aatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaat |
54674 |
T |
|
| Q |
211 |
cgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattaga |
310 |
Q |
| |
|
| |||||||||| | ||||||||| || ||||| ||||||||||||||||||||| ||||||||| |||| ||| | ||||| | ||||| |
|
|
| T |
54673 |
cacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttaga |
54574 |
T |
|
| Q |
311 |
agaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata |
365 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54573 |
agaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata |
54519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 24 - 370
Target Start/End: Original strand, 26909699 - 26910045
Alignment:
| Q |
24 |
aacaccttgatgaaggagtcgttgctcccaatatccctcgtgtctctgactatctgtcatctctattatctgaactcctttgatggaaatgggcttcgac |
123 |
Q |
| |
|
||||||||||||||||||| |||||| || || ||||| || ||||| ||| |||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
26909699 |
aacaccttgatgaaggagttgttgctacccatctcccttgtttctctacaaatcatggatctctatgaaatgaagtcctttgatggaaatgggcttcgac |
26909798 |
T |
|
| Q |
124 |
atctttcctctcttgaaagtcttgaatttcttaactgtcaacaacttgagtcattaccacaaaactgcctcccttcctcactgaaatcgcttgaattttg |
223 |
Q |
| |
|
|| |||||||| ||| |||| | ||| |||| ||| ||||||| ||||||| ||| ||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
26909799 |
gcctctcctctctccaaaatcttcactttattaattgtgaacaactcaagtcatttccagaaaactgcctcccttcctcgctgaaatatcttcaatttta |
26909898 |
T |
|
| Q |
224 |
ttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaa |
323 |
Q |
| |
|
| ||| | | ||||||||| |||||||||||||||||||| ||||||| || |||| || | ||||| | |||||||||||||| ||| |
|
|
| T |
26909899 |
tggctgtgagaaacttgagtcattaccagaagacagcctccccgactctcttgagatgctggaaatgtcatcttgcccattgttagaagaaaggtacaaa |
26909998 |
T |
|
| Q |
324 |
aggcaggaacattggtccaaaattgctcacatccctgtcatagaaat |
370 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26909999 |
aggaaggaacattggtccaaaattgctcacatccctgtcatacaaat |
26910045 |
T |
|
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