View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0099-INSERTION-2 (Length: 480)
Name: NF0099-INSERTION-2
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0099-INSERTION-2 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 46328926 - 46329221
Alignment:
| Q |
24 |
gttcacttgtaacctatccaactgcatctatatttctggttcaaaatagccctcgccatggtcactaaaagatattatagctttaagaaagtaataatac |
123 |
Q |
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| T |
46328926 |
gttcacttataatctatccaactggatctatatttctggttcaaaatagccctcgccatggtcactaaaagatattgtagctttaagaaagtactaat-- |
46329023 |
T |
|
| Q |
124 |
ttaatagacaacatacacagtgtcgttgtattatgaactatggtcttttgaattgaacagggtcggggaaaaaatagtgtattaataatgcttgtaagtt |
223 |
Q |
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| T |
46329024 |
-taatagacaacatacacagtgtcgttgtattatgaactatggtcttttgaattgaacagggtcgggggaaa--tagtgtattaataatgcttataagtt |
46329120 |
T |
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| Q |
224 |
acataattgttgtgtgttcaacactaaattattgtggcatgattagaatcacaggtgcagattttatacagcccaaaacc---attgtcgcatgattaac |
320 |
Q |
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| T |
46329121 |
acataattgttgcgtgttcaacactaaattatcgtggcatgattagaatcacaggtgcaaatttcatacaacccaaaaccttaattgtcacatgattaac |
46329220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 46534400 - 46534351
Alignment:
| Q |
342 |
accatgaataagtttaattttgaatatataaaagagatgagttaatatct |
391 |
Q |
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| T |
46534400 |
accatgaataagtttaattttgaatatataaaagagacgagttaatatct |
46534351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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