View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0099-INSERTION-3 (Length: 460)

Name: NF0099-INSERTION-3
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0099-INSERTION-3
NF0099-INSERTION-3
[»] chr4 (9 HSPs)
chr4 (7-460)||(11698980-11699433)
chr4 (18-460)||(11788810-11789261)
chr4 (18-460)||(11800977-11801428)
chr4 (62-460)||(11785267-11785674)
chr4 (62-459)||(11677841-11678247)
chr4 (62-459)||(11686120-11686526)
chr4 (62-458)||(11708479-11708884)
chr4 (9-49)||(22684528-22684568)
chr4 (19-59)||(32799737-32799777)
[»] scaffold0294 (1 HSPs)
scaffold0294 (77-444)||(20284-20660)
[»] chr2 (2 HSPs)
chr2 (15-59)||(32821838-32821882)
chr2 (15-60)||(33192231-33192276)
[»] chr8 (4 HSPs)
chr8 (19-67)||(14949899-14949947)
chr8 (15-62)||(11813099-11813146)
chr8 (15-47)||(2458575-2458607)
chr8 (9-49)||(39866741-39866781)
[»] chr3 (1 HSPs)
chr3 (23-60)||(49586932-49586969)
[»] chr5 (1 HSPs)
chr5 (15-59)||(28586763-28586807)
[»] chr1 (1 HSPs)
chr1 (15-59)||(26184777-26184821)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 11698980 - 11699433
Alignment:
Q  7 accttgacgagcttatagaaataaactgaaaacagcttatggatctgtcataaattattttgacttggcgtgtattttctacatttgcagcttcctcaac 106  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  11698980 accttgacaagcttatagaaataaagtgaaaacagcttatggatctgtcataaactattttgacttggcttgtattttctacattttcagcttcctcaac 11699079  T
Q  107 aaagcattggtaacaccaaagggatccaaagaatgtagccttagtgaggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaactt 206  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||  |||||||||||||  ||||||    
T  11699080 aaggcattggtaacaccaaagggatccaaagaatgtagcattagtgaggtcgaagaagcaaaggcagtactaaggttaattccaatttgggcgacaactt 11699179  T
Q  207 tagtttatggtattatatttgctcaaatatttacattcttcaccaagcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgc 306  Q
    |||||||||| ||| | ||||||||| | ||||| |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  11699180 tagtttatggcattgtctttgctcaagtttttactttcttcaccaagcaagggagttcaatggagagaacaatatttcctggcttcgacatacctcctgc 11699279  T
Q  307 ttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctca 406  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11699280 ttctcttcaaacgataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctca 11699379  T
Q  407 ggtatcacaatgcttcaaagaattggcaccggaatttttctatctatattcaca 460  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11699380 ggtatcacaatgcttcaaagaattggcactggaatttttctatctatattcaca 11699433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 11788810 - 11789261
Alignment:
Q  18 cttatagaaataaactgaaaacagcttatggatctgtcataaattattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggt 117  Q
    ||||| |||||| |||||||||| ||||||||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| || |||||| |    
T  11788810 cttatggaaatatactgaaaacaacttatggatttgtcataaactattttgacttggcctatattttctacatttgtagcttcctcaataaggcattgct 11788909  T
Q  118 aacaccaaagggatccaaagaa---------tgtagccttagtgaggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaacttta 208  Q
    |||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| || |||||    
T  11788910 aacaccaaagggatccaaagatgctgatcattgtagccttggtgaggtggaagaagcaaaggcagtactaagtttgattccaatttgggctacatcttta 11789009  T
Q  209 gtttatggtattatatttgctcaaatatttacattcttcaccaagcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgctt 308  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  11789010 gtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagttctttggagagaacaatatttcctggtttcaacatacctcccgctt 11789109  T
Q  309 ctcttcaaacaataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcagg 408  Q
    |||||  | |||||   |||||||| |||||| ||||||   | |||||||||||  |||| |||||||||||||||| |||||| || ||  |||||||    
T  11789110 ctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgaccgtttattcgtgccactagcaagagttataactggaaagtcctcagg 11789209  T
Q  409 tatcacaatgcttcaaagaattggcaccggaatttttctatctatattcaca 460  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11789210 tattacaatgcttcaaagaattggcactggaatttttctatctatattcaca 11789261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 11800977 - 11801428
Alignment:
Q  18 cttatagaaataaactgaaaacagcttatggatctgtcataaattattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggt 117  Q
    ||||| |||||| |||||||||| ||||||||| ||||||||| |||||||||||||| | ||||||||||||||| ||||||||||| || |||||| |    
T  11800977 cttatggaaatatactgaaaacaacttatggatttgtcataaactattttgacttggcctatattttctacatttgtagcttcctcaataaggcattgct 11801076  T
Q  118 aacaccaaagggatccaaagaa---------tgtagccttagtgaggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaacttta 208  Q
    |||||||||||||||||||||          ||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| || |||||    
T  11801077 aacaccaaagggatccaaagatgctgatcattgtagccttggtgaggtggaagaagcaaaggcagtactaagtttgattccaatttgggctacatcttta 11801176  T
Q  209 gtttatggtattatatttgctcaaatatttacattcttcaccaagcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgctt 308  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  11801177 gtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagttctttggagagaacaatatttcctggtttcaacatacctcccgctt 11801276  T
Q  309 ctcttcaaacaataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcagg 408  Q
    |||||  | |||||   |||||||| |||||| ||||||   | |||||||||||  |||| |||||||||||||||| |||||| || ||  |||||||    
T  11801277 ctcttggatcaataggtggtgttgctattgttctcttcactcctatctacgaccgtttattcgtgccactagcaagagttataactggaaagtcctcagg 11801376  T
Q  409 tatcacaatgcttcaaagaattggcaccggaatttttctatctatattcaca 460  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11801377 tattacaatgcttcaaagaattggcactggaatttttctatctatattcaca 11801428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 62 - 460
Target Start/End: Original strand, 11785267 - 11785674
Alignment:
Q  62 tattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggtaacaccaaagggatccaaagaa---------tgtagccttagtg 152  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||          |||||||||  ||    
T  11785267 tattttgacttggcttgtattttctacatttgcagcttcctcaacaaggcattgcaaacaccaaagggatccaaagacgaagataagtgtagccttgttg 11785366  T
Q  153 aggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaactttagtttatggtattatatttgctcaaatatttacattcttcaccaa 252  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11785367 aggtcgaagaagcaaaggcagtactaaggttgattccaatttgggcttcgactttagtttatggtattatctttgctcaaatatttacattcttcaccaa 11785466  T
Q  253 gcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgcttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgca 352  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||  ||  |||  |||||||||||||||| |||||||| |     
T  11785467 gcaagggagttctatggagagaacaatatttcctggtttcaacatacctcccgcttctcttggaatgataggcggtgttgcaattgttctcttcagccct 11785566  T
Q  353 atctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgcttcaaagaattggcaccggaatttttctatcta 452  Q
    |||||||||||  |||| ||||||||||||||   |||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11785567 atctacgaccgtttattcgtgccactagcaaggaatataactggaaaaccctcaggtatcacaatgcttcaaagaattggcactggaatttttctatcta 11785666  T
Q  453 tattcaca 460  Q
    ||||||||    
T  11785667 tattcaca 11785674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 11677841 - 11678247
Alignment:
Q  62 tattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggtaacaccaaagggatccaaagaa---------tgtagccttagtg 152  Q
    ||||||||||| || |||| |||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||         |||||||||||||    
T  11677841 tattttgacttagcttgtaatttctacattcgcagcttccttaacaaggcattgctaacaccaaagggatccaaagaagatgaaacttgtagccttagtg 11677940  T
Q  153 aggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaactttagtttatggtattatatttgctcaaatatttacattcttcaccaa 252  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||| |||||    
T  11677941 aggtggaagaagcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaa 11678040  T
Q  253 gcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgcttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgca 352  Q
    ||||||||||||| || ||||||||||||||||||| || ||||||||||| ||||| |||||| | || |||||  |||||||| || |||||||| |     
T  11678041 gcaagggagttctatgcagagaacaatatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccct 11678140  T
Q  353 atctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgcttcaaagaattggcaccggaatttttctatcta 452  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||||| ||| |||| || |||||||||||||||||||||||||| ||||||||| |||| |    
T  11678141 atctatgaccgcatattcgtgccgctagcaagagctatcaccggaaaaccctctggcatcacaatgcttcaaagaattggcactggaatttttatatcga 11678240  T
Q  453 tattcac 459  Q
    || ||||    
T  11678241 taatcac 11678247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 11686120 - 11686526
Alignment:
Q  62 tattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggtaacaccaaagggatccaaagaa---------tgtagccttagtg 152  Q
    ||||||||||| || |||| |||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||         |||||||||||||    
T  11686120 tattttgacttagcttgtaatttctacattcgcagcttccttaacaaggcattgctaacaccaaagggatccaaagaagatgaaacttgtagccttagtg 11686219  T
Q  153 aggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaactttagtttatggtattatatttgctcaaatatttacattcttcaccaa 252  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||| |||||    
T  11686220 aggtggaagaagcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaa 11686319  T
Q  253 gcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgcttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgca 352  Q
    ||||||||||||| || ||||||||||||||||||| || ||||||||||| ||||| |||||| | || |||||  |||||||| || |||||||| |     
T  11686320 gcaagggagttctatgcagagaacaatatttcctggatttgacatacctcccgcttcgcttcaatcgattaacgggcttgcaattcttctcttcagccct 11686419  T
Q  353 atctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgcttcaaagaattggcaccggaatttttctatcta 452  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||||| ||| |||| || |||||||||||||||||||||||||| ||||||||| |||| |    
T  11686420 atctatgaccgcatattcgtgccgctagcaagagctatcaccggaaaaccctctggcatcacaatgcttcaaagaattggcactggaatttttatatcga 11686519  T
Q  453 tattcac 459  Q
    || ||||    
T  11686520 taatcac 11686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 62 - 458
Target Start/End: Original strand, 11708479 - 11708884
Alignment:
Q  62 tattttgacttggcgtgtattttctacatttgcagcttcctcaacaaagcattggtaacaccaaagggatccaaagaa---------tgtagccttagtg 152  Q
    ||||||||||| || |||| ||||| |||| | |||||||||||||| |||||| |||||||||||||||||||||||         ||||||| |||||    
T  11708479 tattttgacttagcttgtaatttcttcattggtagcttcctcaacaaggcattgttaacaccaaagggatccaaagaagatgaaacttgtagccgtagtg 11708578  T
Q  153 aggtggaagaagcaaaggcagtattaaggttggttccaatttgggcttcaactttagtttatggtattatatttgctcaaatatttacattcttcaccaa 252  Q
    |||| |||||||||||||| ||  |||||||||||||||||||| |||||||||| |||||||||||| | ||||||||| | |||||||||||||||||    
T  11708579 aggttgaagaagcaaaggctgttctaaggttggttccaatttggacttcaactttggtttatggtattgtctttgctcaagtttttacattcttcaccaa 11708678  T
Q  253 gcaagggagttctttggagagaacaatatttcctggtttcgacatacctcctgcttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgca 352  Q
    |||||||| |||  |||||||||||||||||||||| || |||||||||||  |||| ||||||||||||||  |  ||||||||||| ||||| || |     
T  11708679 gcaagggacttcaatggagagaacaatatttcctggatttgacatacctccctcttcgcttcaaacaataaaatggcttgcaattgttctcttctgccct 11708778  T
Q  353 atctacgaccgcatatttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgcttcaaagaattggcaccggaatttttctatcta 452  Q
    ||||| || | |||||| |||||||||||||||| |||||| || ||  |||||||||||||||||||||||||||||||||| ||||||||| |||| |    
T  11708779 atctatgagcacatattcgtgccactagcaagagttataactggaaagccctcaggtatcacaatgcttcaaagaattggcactggaatttttatatcaa 11708878  T
Q  453 tattca 458  Q
    ||||||    
T  11708879 tattca 11708884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 22684568 - 22684528
Alignment:
Q  9 cttgacgagcttatagaaataaactgaaaacagcttatgga 49  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  22684568 cttgaagagcttaaagaaataagctgaaaacagcttatgga 22684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32799777 - 32799737
Alignment:
Q  19 ttatagaaataaactgaaaacagcttatggatctgtcataa 59  Q
    |||| ||||||| ||||||||||||||||||| ||||||||    
T  32799777 ttatcgaaataagctgaaaacagcttatggatgtgtcataa 32799737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 77 - 444
Target Start/End: Original strand, 20284 - 20660
Alignment:
Q  77 tgtattttctacatttgcagcttcctcaacaaagcattggtaacaccaaagggatccaaagaa---------tgtagccttagtgaggtggaagaagcaa 167  Q
    ||||||||| ||| | |||||||||||||||| |||||| ||| |||||||||||||||||||         ||||| ||||| ||||| ||||||||||    
T  20284 tgtattttcaacaatggcagcttcctcaacaaggcattgctaaaaccaaagggatccaaagaagatgagacttgtagtcttagcgaggtcgaagaagcaa 20383  T
Q  168 aggcagtattaaggttggttccaatttgggcttcaactttagtttatggtattatatttgctcaaatatttacattcttcaccaagcaagggagttcttt 267  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |    
T  20384 aggcagtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagttctat 20483  T
Q  268 ggagagaacaatatttcctggtttcgacatacctcctgcttctcttcaaacaataaacggtgttgcaattgttgtcttcagcgcaatctacgaccgcata 367  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||| |||| |  |||  | || ||| |||||||| | ||||||||||| |||    
T  20484 gcagagaacaatatttcctggtttcgacatacctccggcttctcttcaaacgataaccaatgtctccatagttctcttcagccctatctacgaccgtata 20583  T
Q  368 tttgtgccactagcaagagctataaccggtaaaacctcaggtatcacaatgcttcaaagaattggcaccggaatttt 444  Q
    ||||||||||||||||||  ||| || || ||| ||||||| |||||| ||||||||||||||||||| ||||||||    
T  20584 tttgtgccactagcaagaagtatcactggaaaaccctcaggcatcacattgcttcaaagaattggcactggaatttt 20660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 32821838 - 32821882
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatggatctgtcataa 59  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  32821838 gagcttatagaaataaactgaaaacagcttatggacatgtcataa 32821882  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 33192231 - 33192276
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatggatctgtcataaa 60  Q
    ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  33192231 gagcttataaatataagctgaaaacagcttatggatatgtcataaa 33192276  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 14949899 - 14949947
Alignment:
Q  19 ttatagaaataaactgaaaacagcttatggatctgtcataaattatttt 67  Q
    |||||||||||| ||||||||||||||||||  |||||||| |||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttatttt 14949947  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 11813146 - 11813099
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatggatctgtcataaatt 62  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  11813146 gagcttacagaaataagctgaaaacagcctatggatatgtcataaatt 11813099  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 2458607 - 2458575
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatg 47  Q
    |||||||| ||||||||||||||||||||||||    
T  2458607 gagcttatggaaataaactgaaaacagcttatg 2458575  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 39866781 - 39866741
Alignment:
Q  9 cttgacgagcttatagaaataaactgaaaacagcttatgga 49  Q
    ||||| ||||||||  |||||||||||||||||||||||||    
T  39866781 cttgaagagcttatgaaaataaactgaaaacagcttatgga 39866741  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 49586969 - 49586932
Alignment:
Q  23 agaaataaactgaaaacagcttatggatctgtcataaa 60  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  49586969 agaaataaactgaaaacaacttatggatatgtcataaa 49586932  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 28586807 - 28586763
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatggatctgtcataa 59  Q
    |||||||| ||||||| |||||||||||||| |||| ||||||||    
T  28586807 gagcttatcgaaataagctgaaaacagcttacggatatgtcataa 28586763  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 26184777 - 26184821
Alignment:
Q  15 gagcttatagaaataaactgaaaacagcttatggatctgtcataa 59  Q
    |||||||| ||||||| ||||||||||||||||||  ||||||||    
T  26184777 gagcttatggaaataatctgaaaacagcttatggacatgtcataa 26184821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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