View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0099-INSERTION-4 (Length: 691)
Name: NF0099-INSERTION-4
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0099-INSERTION-4 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 196 - 689
Target Start/End: Original strand, 54909898 - 54910392
Alignment:
| Q |
196 |
ttgtcgggtcctagacatcctataattctaataaactcattggactgagtgccaattgaaaaacccatgaagctaaagactaagtgacatgggcactatt |
295 |
Q |
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| T |
54909898 |
ttgtcgggtcctagacatcctataattctaataaactcattgtactgagtgccaattgaaaaacctatgaagctaaagactaagtgacatgggcactatt |
54909997 |
T |
|
| Q |
296 |
gaagttgagggtaaatttccataaacaaactgattatgaaacctcaaaaaagatgaacctatcttttaacaaatcctaagcatttggtatgtctggaatc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54909998 |
gaagttgagggtaaatttccataaacaaactgattatgaaacctcaaaaaagatgaacctatcttttaacaaatcctaagcatttggtatgtctggaatc |
54910097 |
T |
|
| Q |
396 |
agtgatactaggactctgagtgagttgtttgtttgtttgggaagtgatagaaagtttctccattgcgttgataaacttgcgcaaatacttgatgtactcg |
495 |
Q |
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| T |
54910098 |
agtgatactaggactctgagtgagttgtttgtttgtttgggaagtgatagaaagtttatccattgcgttgataaacttgcgcaaatacttgatgtactcg |
54910197 |
T |
|
| Q |
496 |
gggaaagtttcaaggttgcaatggcctccacctttaacccacaaggggtcatatttttcctttgagagctcccacaaccgctttccatgagaacaatcca |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54910198 |
gggaaagtttcaaggttgcaatggcctccacctttaacccacaaggggtcatatttttcctttgagagctcccacaaccgctttccatgagaacaatcca |
54910297 |
T |
|
| Q |
596 |
caatttcatcttctgttccctgtaaacaatccataagcagaaacaaaactattattagtgtc-aaaaatatccatgtcagttgtgatgctttctg |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54910298 |
caatttcatcttctgttccctgtaaacaatccataagcagaaacaaaactattattagtgtcaaaaaatatccatgtcagttgtgatgctttctg |
54910392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 54909709 - 54909840
Alignment:
| Q |
7 |
acctatatttatacatatgcaaaacaactttaccataattttaaatcaagtagacaataactaaacaggaaaacaaaacaccactaaggagttcaccacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54909709 |
acctatatttatacatatgcaaaacaactttaccataattttaaatcaagtagacaataactaaacaggaaaacaaaacaccactaaggagttcaccacc |
54909808 |
T |
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| Q |
107 |
taaataaagctgtcactatctcaacaggattt |
138 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
54909809 |
taaataaagctgtcactatctcaacaggattt |
54909840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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