View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0099_high_2 (Length: 257)
Name: NF0099_high_2
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0099_high_2
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 35 - 237
Target Start/End: Complemental strand, 45280674 - 45280472
Alignment:
Q
35
aattatatccttccatgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagacttcaccatgcagcgtacgt
134
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
45280674
aattatatccttccatgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagtcttcaccatgcagcgtacgt
45280575
T
Q
135
cctgatttgttatgcagcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatatt
234
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45280574
cctgatttgttatgcagcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatatt
45280475
T
Q
235
cat
237
Q
|||
T
45280474
cat
45280472
T
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Alignment Overview ]
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