View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0099_low_1 (Length: 492)

Name: NF0099_low_1
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0099_low_1
NF0099_low_1
[»] chr3 (5 HSPs)
chr3 (78-399)||(31424345-31424666)
chr3 (89-277)||(24712760-24712951)
chr3 (159-383)||(823097-823325)
chr3 (159-196)||(4637266-4637303)
chr3 (251-350)||(53279643-53279742)
[»] chr8 (4 HSPs)
chr8 (95-322)||(17819533-17819758)
chr8 (234-323)||(31503088-31503177)
chr8 (311-380)||(5221506-5221576)
chr8 (337-377)||(25184827-25184867)
[»] chr4 (2 HSPs)
chr4 (89-378)||(48567302-48567591)
chr4 (129-316)||(23440152-23440344)
[»] chr1 (5 HSPs)
chr1 (89-373)||(9613087-9613371)
chr1 (89-342)||(9081208-9081465)
chr1 (244-301)||(22200277-22200334)
chr1 (244-301)||(22235189-22235246)
chr1 (332-380)||(27905761-27905809)
[»] chr2 (6 HSPs)
chr2 (239-382)||(1946042-1946186)
chr2 (244-362)||(1945841-1945960)
chr2 (107-348)||(15817096-15817334)
chr2 (240-277)||(11199759-11199796)
chr2 (157-196)||(30598963-30599002)
chr2 (355-383)||(27740341-27740369)
[»] chr7 (4 HSPs)
chr7 (181-323)||(15126823-15126964)
chr7 (242-301)||(2613623-2613682)
chr7 (178-273)||(1819780-1819873)
chr7 (157-194)||(26386030-26386067)
[»] chr5 (1 HSPs)
chr5 (240-384)||(26367678-26367823)
[»] chr6 (4 HSPs)
chr6 (159-382)||(5746790-5747015)
chr6 (89-316)||(32316490-32316713)
chr6 (242-301)||(21029892-21029952)
chr6 (182-283)||(4554320-4554420)
[»] scaffold0127 (1 HSPs)
scaffold0127 (161-282)||(21349-21470)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 78 - 399
Target Start/End: Original strand, 31424345 - 31424666
Alignment:
Q  78 aggagcagagaggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtg 177  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31424345 aggagtagagaggtggaggccgactaagcgttggaataggacatttttggatgtggctcaactaaggtgatgataaggtgttggttgatttagaggggtg 31424444  T
Q  178 ttttttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtg 277  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31424445 ttttttggggtgagtagcgagcgaaggggggtgtatggatttcgtgttcaatggctgtttatgatggagtttgatttaggtggtgaagttggttttggtg 31424544  T
Q  278 attgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatacgacg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  31424545 attgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttaatttggatgttccgcctatatacgacg 31424644  T
Q  378 cctttatcatgtaacctctgat 399  Q
     |||||||||||||||||||||    
T  31424645 tctttatcatgtaacctctgat 31424666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 24712760 - 24712951
Alignment:
Q  89 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgtttttt----g 184  Q
    |||||||||||||||||  |||||||||| |||||| || ||||||||| | ||||||| |  ||   || ||||||||||||| ||| ||||||    |    
T  24712760 ggtggaggccgactaagcattggaatatgtcattttcgggtgtggctcagcaaaggtgatgggaaaaggtggtttgatttagagaggttttttttttttg 24712859  T
Q  185 gggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtg 277  Q
     |||||| |||||||||| |  ||| |||||||||||| |||| ||   ||| | ||||||||||| |||||||||| |||||||||| ||||    
T  24712860 tggtgagcagcgagcgaatga-ggtctatggatttcgttttcagtgatcgttcgcgatggagtttgttttaggtggtaaagttggtttaggtg 24712951  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 383
Target Start/End: Complemental strand, 823325 - 823097
Alignment:
Q  159 tgtttgatttagaggggtgttt--tttggggtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgttt-gtgatggagtttgattt 254  Q
    ||||||| |||||| |||||||  ||| |||||||||| | |||||||||||| ||||||| |||| || || ||| ||||| ||||||||||||| |||    
T  823325 tgtttgaattagagaggtgtttcttttagggtgagtagag-gcgaagggtggt-tatggatatcgtttttcagtggttgttttgtgatggagtttgtttt 823228  T
Q  255 aggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt-tttgtgt-attttatggtgtttcat 352  Q
    |||||||||||||  ||||||||  || ||| ||  ||||||||||| ||||   ||| ||||| | ||  |||    ||||  ||||||||||||| ||    
T  823227 aggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggtgtctttttatggtgtttaat 823128  T
Q  353 ttgggtgttccacctatatacgacgccttta 383  Q
    ||||||||||| | |||||||||||||||||    
T  823127 ttgggtgttccccttatatacgacgccttta 823097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 4637303 - 4637266
Alignment:
Q  159 tgtttgatttagaggggtgttttttggggtgagtagcg 196  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  4637303 tgtttgatttagaggggtgttttgtggagtgagtagcg 4637266  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 350
Target Start/End: Original strand, 53279643 - 53279742
Alignment:
Q  251 atttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgtttt-gtgtattttatggtgttt 349  Q
    |||| ||||||||||||||| |||  | || || ||||| || |||||||| |||||||||||||||||| ||  |||||| |||| ||||||| |||||    
T  53279643 atttgggtggtgaagttggtcttgaaggttatt-ttcttatgagtgttgaaggtagatcttggttaggtggtgtgtgttttagtgttttttatgatgttt 53279741  T

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Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 95 - 322
Target Start/End: Complemental strand, 17819758 - 17819533
Alignment:
Q  95 ggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtag 194  Q
    |||||||||||  ||| |||||| ||||||||| | ||||||| ||||||||| || |||  ||||||||||||||||| || |||||||||||||| ||    
T  17819758 ggccgactaagcattgaaatatgtcatttttgggtatggctcagctaaggtgacgagaagaggttgtttgatttagaggagttttttttggggtgagcag 17819659  T
Q  195 cgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttggg 294  Q
    ||||||||||| ||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  17819658 cgagcgaaggg-ggtttatggatttcgttttcagtggttgtttgcgatggagtttgatttaggtggtgaagttggttttggtggttg-tgttcttatggg 17819561  T
Q  295 tgttgaaagtagatcttggttaggtgat 322  Q
    ||||||| |||| | |||||||||||||    
T  17819560 tgttgaaggtaggttttggttaggtgat 17819533  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 31503177 - 31503088
Alignment:
Q  234 gtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatg 323  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| || |||||||  || |||||||| |||| |||||| || ||||||    
T  31503177 gtttgcgatggagtttgatttaggtggcgaagttggttttggtggttcttgttctcatgcgtgttgaaggtaggtcttgggtatgtgatg 31503088  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 5221576 - 5221506
Alignment:
Q  311 tggttaggtgatgattgttttgt-gtattttatggtgtttcatttgggtgttccacctatatacgacgcct 380  Q
    |||||||||| ||  |||||||| || |||| ||||||||| |||||||||||| |||||||||| |||||    
T  5221576 tggttaggtggtgtgtgttttgttgtcttttttggtgtttcttttgggtgttccgcctatatacggcgcct 5221506  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 25184867 - 25184827
Alignment:
Q  337 ttttatggtgtttcatttgggtgttccacctatatacgacg 377  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  25184867 ttttatggtgtttacttcgggtgttccacctatatacgacg 25184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 89 - 378
Target Start/End: Complemental strand, 48567591 - 48567302
Alignment:
Q  89 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 188  Q
    |||||| || ||||||| |||||||||  ||||||||| ||  ||||||  | |||||| || |||  ||||| |||||||||||| |||||||||||||    
T  48567591 ggtggaagctgactaagcgttggaatagaacatttttgaatacggctcagtttaggtgatgagaagaggttgtctgatttagagggatgttttttggggt 48567492  T
Q  189 gagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttg-tgatggagtttgatttaggtggtgaagttggttttggtgattgttgttc 287  Q
    ||| |||||||||| || ||| |||||||||||| |||| | || ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48567491 gagcagcgagcgaaagg-ggtttatggatttcgttttcagttgccgtttaatgatgaagtttgatttaggtggtgaagttggttttggtgattgttgttc 48567393  T
Q  288 t-tttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatacgacgc 378  Q
    | ||| |||||| || |||||||||||||||||||||  |||||  ||| ||||||||||||   ||| |||||||| ||||||||||||||    
T  48567392 tctttaggtgtt-aaggtagatcttggttaggtgatgggtgtttaatgtcttttatggtgttgattttaggtgttccgcctatatacgacgc 48567302  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 316
Target Start/End: Complemental strand, 23440344 - 23440152
Alignment:
Q  129 tgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtagcgagcg--aagggtggtgtatggatttcgtg--t 224  Q
    |||| |||| ||||||||| || |||| ||| ||||||||||||| ||||  ||| ||||||| |||||| |  ||| | ||| ||||||||||||   |    
T  23440344 tgtgcctcagctaaggtgatgagaaggggttatttgatttagaggagtgtaattttgggtgagcagcgagagggaagag-ggtttatggatttcgttgtt 23440246  T
Q  225 tcaatggctgtttg-tgatggagtttgatttaggtggtgaagt-tggttttggtgattgttgttcttttgggtgttgaaagtagatcttggtta 316  Q
    ||| |||  ||||  ||||||||||||||||||||||||||||  |||||| ||  |||||||| |||||||||||||| |||  |||||||||    
T  23440245 tcagtggtcgttttatgatggagtttgatttaggtggtgaagtggggttttagtagttgttgtttttttgggtgttgaaggtaagtcttggtta 23440152  T

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Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 89 - 373
Target Start/End: Complemental strand, 9613371 - 9613087
Alignment:
Q  89 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttg-atttagaggggtgttttttgggg 187  Q
    ||||||||||||||||| |||| ||||  | ||||||||||||||||||  || | ||| || |||  |||||||  ||||| | |||| ||||||||||    
T  9613371 ggtggaggccgactaagcgttgaaataaaatatttttggatgtggctcagttatgatgatgagaagtggttgtttttatttataagggtattttttgggg 9613272  T
Q  188 tgagtagcgagcgaagggtggtgtatggatttcgtgttcaa-tggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgtt 286  Q
    |||||||||||||||||| |||  ||||||||| | ||| | ||||  |||| |||| ||||||||||||||||||||||||| ||||||| |  |||||    
T  9613271 tgagtagcgagcgaaggggggt--atggatttcattttccagtggcaatttgcgatgaagtttgatttaggtggtgaagttgggtttggtggtcattgtt 9613174  T
Q  287 cttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttatggtgtttcatttgggtgttccacctatatac 373  Q
    || |||||||||||| |||| |||||||||| |||||  ||||||||||||||||||||||||| ||| |||  ||| |||||||||    
T  9613173 ctattgggtgttgaaggtaggtcttggttagttgatgggtgttttgtgtattttatggtgtttctttttggtcatccgcctatatac 9613087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 342
Target Start/End: Complemental strand, 9081465 - 9081208
Alignment:
Q  89 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 188  Q
    ||||||||| |||||||  |||||||| |||| ||| |  |||||||||| |||||||| || ||   ||||||| ||||||||||||| ||||||||||    
T  9081465 ggtggaggctgactaagtattggaataggacactttcgagtgtggctcaattaaggtgatgagaataggttgttttatttagaggggtggtttttggggt 9081366  T
Q  189 gagtagcgagcgaagggtggtgtatggatttcgtgtt--caatgg-ctgtttgtgatggagtttgatttaggtggtgaagt-tggttttggtgattgttg 284  Q
     || | | || |||||| ||| |||||||||||| ||  || ||| || ||| |||| |||||||||||||||||  || |  ||||||| || ||||||    
T  9081365 tagcaacaagggaaggg-ggtttatggatttcgttttttcagtggtctatttatgatagagtttgatttaggtggcaaattagggttttgatgcttgttg 9081267  T
Q  285 ttc-ttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttat 342  Q
    |||   |||||||||||| |||||||||| ||| ||||||  ||| |||||| ||||||    
T  9081266 ttcagcttgggtgttgaaggtagatcttgattaagtgatgggtgtattgtgtcttttat 9081208  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 22200277 - 22200334
Alignment:
Q  244 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 301  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22200277 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22200334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 22235189 - 22235246
Alignment:
Q  244 gagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 301  Q
    |||||||||||||||||||| |||||||||| || | || | ||||||||||||||||    
T  22235189 gagtttgatttaggtggtgatgttggttttgatggtggtgggtcttttgggtgttgaa 22235246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 27905761 - 27905809
Alignment:
Q  332 gtgtattttatggtgtttcatttgggtgttccacctatatacgacgcct 380  Q
    |||| |||||||||||||  |||  ||||||||||||||||||||||||    
T  27905761 gtgtcttttatggtgtttattttttgtgttccacctatatacgacgcct 27905809  T

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Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 382
Target Start/End: Original strand, 1946042 - 1946186
Alignment:
Q  239 tgatggagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtat 337  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||  |||| ||||||| |||| | ||||||||||||||||||| |||||| |    
T  1946042 tgatggagtttgatttaggtggtgaagtggagttttggtggttgttgttcgcttggatgttgaaggtaggttttggttaggtgatgattgtattgtgtct 1946141  T
Q  338 tttatggtgtttcatttgggtgttccacctatatacgacgccttt 382  Q
    |||||| | |||| ||||| ||||||| |||||||| ||| ||||    
T  1946142 tttatgatatttcttttggatgttccatctatatacaacgtcttt 1946186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 1945960 - 1945841
Alignment:
Q  244 gagtttgatttaggtggtgaagttg-gttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttgtgtattttat 342  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||| |||| ||||||||||||| | |||||||||||||| |||| |||||| ||||||    
T  1945960 gagtttgatttaggtggtgaagtggagttttggtggttgttgttcgtttgagtgttgaaagtaggttttggttaggtgatggttgtattgtgtcttttat 1945861  T
Q  343 ggtgtttcatttgggtgttc 362  Q
    ||| |||| |||||||||||    
T  1945860 ggtatttcttttgggtgttc 1945841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 348
Target Start/End: Complemental strand, 15817334 - 15817096
Alignment:
Q  107 gttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggtgagtagcgagcgaagggt 206  Q
    |||| ||||||| |||||  ||||||| ||||||| ||||| || |||   |||||||||| |||||||| || |||||||||||||||  |||| || |    
T  15817334 gttgaaatatgaaattttcagatgtggttcaactatggtgatgaaaagagattgtttgattcagaggggt-ttatttggggtgagtagcaggcgatggat 15817236  T
Q  207 ggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtag 306  Q
    ||| |||||||||| | |||| ||||  ||||  ||||||||||||||||||||||| |||  ||||| || ||||||||||   |||||||||||||||    
T  15817235 ggt-tatggatttctttttcagtggccatttgcaatggagtttgatttaggtggtgatgtttcttttgatggttgttgttctcaagggtgttgaaagtag 15817137  T
Q  307 atcttggttaggtgatgattgt-tttgtgtattttatggtgtt 348  Q
      ||| ||||||| |||  ||| || |||||||||||||||||    
T  15817136 gacttcgttaggtaatg--tgtattagtgtattttatggtgtt 15817096  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 11199796 - 11199759
Alignment:
Q  240 gatggagtttgatttaggtggtgaagttggttttggtg 277  Q
    |||||||||||||||||| |||||||||||||||||||    
T  11199796 gatggagtttgatttaggcggtgaagttggttttggtg 11199759  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 30599002 - 30598963
Alignment:
Q  157 gttgtttgatttagaggggtgttttttggggtgagtagcg 196  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  30599002 gttgtttgatttagaggggtgttttttggtatgagtagcg 30598963  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 27740341 - 27740369
Alignment:
Q  355 gggtgttccacctatatacgacgccttta 383  Q
    |||||||||||||||||||||||||||||    
T  27740341 gggtgttccacctatatacgacgccttta 27740369  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 15126964 - 15126823
Alignment:
Q  181 tttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgatt 280  Q
    ||||||||||||||||  ||| |  |||| |||||||||| | || | ||||||||||  ||||||||||||||||||||||| |||| |||| ||| ||    
T  15126964 tttggggtgagtagcggacgatgaatggt-tatggatttcttttttagtggctgtttgcaatggagtttgatttaggtggtgatgttgttttttgtggtt 15126866  T
Q  281 gttgttcttttgggtgttgaaagtagatcttggttaggtgatg 323  Q
    ||||||||  ||||| ||||  ||||   ||||||||||||||    
T  15126865 gttgttctcatgggtattgatggtagggtttggttaggtgatg 15126823  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 2613682 - 2613623
Alignment:
Q  242 tggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaa 301  Q
    ||||||||||||||||||||||||||| |||| ||| | || | ||||||||||||||||    
T  2613682 tggagtttgatttaggtggtgaagttgatttttgtggtggtgggtcttttgggtgttgaa 2613623  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 1819873 - 1819780
Alignment:
Q  178 ttttttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggtttt 273  Q
    |||||||| |||||||||| |||| ||||  | |||||||||||| | |||||| |||||| | ||||||||| ||||||| ||||| ||||||||    
T  1819873 ttttttggagtgagtagcg-gcgatgggtatt-tatggatttcgtttccaatggttgtttgcgttggagtttgttttaggtagtgaaattggtttt 1819780  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 26386067 - 26386030
Alignment:
Q  157 gttgtttgatttagaggggtgttttttggggtgagtag 194  Q
    ||||||||||||||||||||||||| || |||||||||    
T  26386067 gttgtttgatttagaggggtgttttgtgaggtgagtag 26386030  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 384
Target Start/End: Complemental strand, 26367823 - 26367678
Alignment:
Q  240 gatggagtttgatttaggtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgttttg-tgtatt 338  Q
    |||||||||||| ||||||||||||||||| |||| || ||||||||||  ||||||||||| | ||  ||| |||| ||||||  ||| ||| ||| ||    
T  26367823 gatggagtttgacttaggtggtgaagttggatttgatggttgttgttctcatgggtgttgaaggcaggacttagttaagtgatgtgtgtattgatgtctt 26367724  T
Q  339 ttatggtgtttcatttgggtgttccacctatatacgacgcctttat 384  Q
    | |||||||||  ||| ||||||||  ||||||||| || ||||||    
T  26367723 taatggtgttttgtttaggtgttccgtctatatacggcgtctttat 26367678  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 382
Target Start/End: Original strand, 5746790 - 5747015
Alignment:
Q  159 tgtttgatttagaggggtgttttttggg-gtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgtttgtgatggagtttgatttag 256  Q
    |||||||||| |||||||||||||| || |||||||||| |||| ||||| | ||||||||| || || || ||| |||||| |||||||| || |||||    
T  5746790 tgtttgatttggaggggtgtttttttggagtgagtagcg-gcgatgggtgct-tatggatttagtttttcagtggttgtttgcgatggagtatgttttag 5746887  T
Q  257 gtggtgaagttggttttggtgattgttgttcttttgggtgttgaaagtagatcttggttaggtgatgattgt--tttgtgtattttatggtgtttcattt 354  Q
    | |||||| |||||||||||| |||| |   |  ||||||||||| |||| |||| | |||||||||  |||  || |||| |||  || ||||   |||    
T  5746888 gcggtgaaattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcatttt 5746987  T
Q  355 gggtgttccacctatatacgacgccttt 382  Q
     |||||||| ||||||||||||||||||    
T  5746988 aggtgttccgcctatatacgacgccttt 5747015  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 32316490 - 32316713
Alignment:
Q  89 ggtggaggccgactaagggttggaatatgacatttttggatgtggctcaactaaggtgaagataaggtgttgtttgatttagaggggtgttttttggggt 188  Q
    |||||||||||| | || ||||||||| ||||||||||  |||| ||| ||||  | || || |||  |||||||||||  ||||||||||| | |||||    
T  32316490 ggtggaggccgaatgagcgttggaataagacatttttg--tgtgtctcgactattgagatgagaagaggttgtttgattaggaggggtgtttct-ggggt 32316586  T
Q  189 gagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattgttgttct 288  Q
    ||||| |  |||| ||||| | |||| ||||||| |||| |||   ||| |  ||||||||||| |||||| || |||| | |||||| |||||||||||    
T  32316587 gagtaacatgcgatgggtgtt-tatgaatttcgttttcagtggtcatttctcgtggagtttgatctaggtgatgcagttaggtttggtaattgttgttct 32316685  T
Q  289 tttgggtgttgaaagtagatcttggtta 316  Q
    | || |||||||| |||| |||||||||    
T  32316686 tatgtgtgttgaaggtaggtcttggtta 32316713  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 21029892 - 21029952
Alignment:
Q  242 tggagtttgatttaggtggtgaagttgg-ttttggtgattgttgttcttttgggtgttgaa 301  Q
    ||||||||||||||| |||||||||||| |||||||| | || ||||||||||||||||||    
T  21029892 tggagtttgatttagctggtgaagttggtttttggtggtggtggttcttttgggtgttgaa 21029952  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 4554420 - 4554320
Alignment:
Q  182 ttggggtgagtagcgagcgaagggtggtgtatggatttcgtgttcaatggctgtttgtgatggagtttgatttaggtggtgaagttggttttggtgattg 281  Q
    |||||||||||||||  ||| || || | ||||||||| || |||| |||  ||||| ||||||||||| |||  ||| ||||||||| |||||||||||    
T  4554420 ttggggtgagtagcggacgatggatgtt-tatggattttgttttcagtggtcgtttgcgatggagtttggtttgagtgatgaagttgggtttggtgattg 4554322  T
Q  282 tt 283  Q
    ||    
T  4554321 tt 4554320  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 21470 - 21349
Alignment:
Q  161 tttgatttagaggggtgttttttggg-gtgagtagcgagcgaagggtggtgtatggatttcgtgtt-caatggctgtttgtgatggagtttgatttaggt 258  Q
    |||||||| |||||||||||||| || |||||||||| |||| ||||| | ||||||||| || || ||  || |||||| |||||||| || ||||||     
T  21470 tttgatttggaggggtgtttttttggagtgagtagcg-gcgatgggtgct-tatggatttagtttttcagcggttgtttgcgatggagtatgttttaggc 21373  T
Q  259 ggtgaagttggttttggtgattgt 282  Q
    |||||| |||||||||||| ||||    
T  21372 ggtgaaattggttttggtggttgt 21349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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