View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0099_low_2 (Length: 378)
Name: NF0099_low_2
Description: NF0099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0099_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 96 - 295
Target Start/End: Original strand, 18353271 - 18353464
Alignment:
| Q |
96 |
aaaataaagcataatatagagaaaaggtatggcaaggagtgagaggaaagagattgttttaattttggnnnnnnnnnnnnnnnnngtagttgtggcacaa |
195 |
Q |
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| T |
18353271 |
aaaataaagcataatatagagaaaaggtatgggaaggagtgagaggaaagagattgttttaatttttgtgatgatgatga------tagttgtggcacag |
18353364 |
T |
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| Q |
196 |
tctaacgattctgcacacgaagagtcatttaaaagagcaatttgtgctttgaagtgtccctttaaatgtaaaggcaatatagaacattatgccgtctgtg |
295 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
18353365 |
gctaacgattctgcacatgaagagtcattcaaaagagcaatttgtgctttgaagtgtccctttaaatgtaaaggcaatataaaacattatgccgtttgtg |
18353464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 18350146 - 18349953
Alignment:
| Q |
96 |
aaaataaagcataatatagagaaaaggtatggcaaggagtgagaggaaagagattgttttaattttggnnnnnnnnnnnnnnnnngtagttgtggcacaa |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
18350146 |
aaaataaagcataatatagagaaaaggtatgggaaggagtgagaggaaagagattgttttaatttttgtgatgatgatga------tagttgtggcacag |
18350053 |
T |
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| Q |
196 |
tctaacgattctgcacacgaagagtcatttaaaagagcaatttgtgctttgaagtgtccctttaaatgtaaaggcaatatagaacattatgccgtctgtg |
295 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
18350052 |
gctaacgattctgcacatgaagagtcattcaaaagagcagtttgtgctttgaagtgtccctttaaatgtaaaggcaatataaaacattatgccgtttgtg |
18349953 |
T |
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