View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0100_high_5 (Length: 244)
Name: NF0100_high_5
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0100_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 39147833 - 39148018
Alignment:
| Q |
22 |
caagtatcacaaacttgatcatcatcatcaccattattttcatcgttctcaacaatagttccttctctttcatgattcccttgctcccctttccaaacat |
121 |
Q |
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| T |
39147833 |
caagtatcacaaacttgatca---tcatcaccattgttttcatcattatcagtaattgtttcttctctttcatgattcccttgttcccctttccaaacat |
39147929 |
T |
|
| Q |
122 |
tcttcacatgcaaaatcttcaaaacccaattctctctctgcccctccctacaatcctcaccgtcatccccaacggtttttgtttctctg |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39147930 |
tcttgacatgcaaaatcttcaaaacccaattctctctctgcccctccctacaatcctcaccgtcatccccaacggtttttgtttctctg |
39148018 |
T |
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