View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0100_low_14 (Length: 238)

Name: NF0100_low_14
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0100_low_14
NF0100_low_14
[»] chr2 (10 HSPs)
chr2 (26-153)||(37497084-37497211)
chr2 (51-130)||(37491848-37491927)
chr2 (59-105)||(45000847-45000893)
chr2 (59-111)||(18570978-18571030)
chr2 (59-111)||(31026701-31026753)
chr2 (75-112)||(10250731-10250768)
chr2 (75-152)||(21782835-21782912)
chr2 (29-109)||(5367200-5367279)
chr2 (29-109)||(18840985-18841064)
chr2 (75-111)||(40681988-40682024)
[»] chr3 (8 HSPs)
chr3 (53-131)||(20691305-20691383)
chr3 (54-111)||(40150567-40150624)
chr3 (29-114)||(45451556-45451640)
chr3 (37-110)||(48202248-48202321)
chr3 (58-114)||(13807172-13807228)
chr3 (36-114)||(25093505-25093582)
chr3 (75-137)||(32384380-32384442)
chr3 (29-87)||(40993307-40993364)
[»] chr7 (10 HSPs)
chr7 (36-111)||(2982114-2982189)
chr7 (75-136)||(31808526-31808586)
chr7 (62-111)||(38134410-38134459)
chr7 (29-136)||(598189-598295)
chr7 (58-116)||(21247736-21247794)
chr7 (29-114)||(12278838-12278922)
chr7 (75-112)||(44172907-44172944)
chr7 (59-111)||(2525845-2525897)
chr7 (59-107)||(9482944-9482992)
chr7 (29-109)||(21880160-21880239)
[»] chr1 (7 HSPs)
chr1 (30-125)||(19637760-19637854)
chr1 (29-136)||(38078633-38078739)
chr1 (59-155)||(20157351-20157447)
chr1 (53-143)||(2896116-2896206)
chr1 (75-111)||(11571591-11571627)
chr1 (51-114)||(25452143-25452204)
chr1 (75-111)||(40747790-40747826)
[»] chr5 (10 HSPs)
chr5 (27-109)||(30502358-30502439)
chr5 (27-109)||(30542701-30542782)
chr5 (59-110)||(17925173-17925224)
chr5 (47-110)||(39424648-39424711)
chr5 (60-111)||(43208276-43208327)
chr5 (59-109)||(3966511-3966561)
chr5 (70-144)||(41600871-41600945)
chr5 (75-124)||(11596472-11596521)
chr5 (28-109)||(23012379-23012459)
chr5 (59-111)||(28296334-28296386)
[»] chr4 (12 HSPs)
chr4 (52-142)||(33950111-33950201)
chr4 (76-136)||(12077809-12077869)
chr4 (54-130)||(56049864-56049939)
chr4 (75-114)||(5654608-5654647)
chr4 (60-111)||(18513243-18513294)
chr4 (60-111)||(43299973-43300024)
chr4 (35-114)||(48139267-48139345)
chr4 (76-142)||(34515892-34515958)
chr4 (75-112)||(10546153-10546190)
chr4 (59-107)||(5225614-5225662)
chr4 (29-109)||(8423690-8423769)
chr4 (63-111)||(14465299-14465347)
[»] chr8 (11 HSPs)
chr8 (53-110)||(12985399-12985456)
chr8 (29-90)||(44462167-44462227)
chr8 (29-90)||(44469700-44469760)
chr8 (54-114)||(12606825-12606885)
chr8 (75-113)||(7616866-7616904)
chr8 (61-114)||(31236580-31236633)
chr8 (61-113)||(3508056-3508108)
chr8 (53-109)||(14134707-14134763)
chr8 (62-114)||(28819194-28819246)
chr8 (29-149)||(33405356-33405475)
chr8 (70-110)||(34201058-34201098)
[»] chr6 (13 HSPs)
chr6 (29-109)||(28715303-28715382)
chr6 (59-109)||(9617442-9617492)
chr6 (29-87)||(12236688-12236746)
chr6 (53-114)||(30851605-30851664)
chr6 (59-108)||(9629392-9629441)
chr6 (76-112)||(2140499-2140535)
chr6 (53-109)||(7265588-7265644)
chr6 (53-105)||(7377991-7378043)
chr6 (59-107)||(9024177-9024225)
chr6 (50-106)||(10157995-10158051)
chr6 (29-109)||(12627549-12627628)
chr6 (53-149)||(13851704-13851800)
chr6 (41-109)||(19040360-19040427)
[»] scaffold0571 (1 HSPs)
scaffold0571 (79-122)||(7685-7728)
[»] scaffold0598 (1 HSPs)
scaffold0598 (76-136)||(8071-8131)
[»] scaffold0011 (1 HSPs)
scaffold0011 (58-110)||(240021-240073)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-143)||(225285-225353)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 37497211 - 37497084
Alignment:
Q  26 ccatgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtc 125  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37497211 ccatgtcccggtgccgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtc 37497112  T
Q  126 agtgttcgtgttgtgtccaatgtctgtg 153  Q
    |||||| || ||||||||||||||||||    
T  37497111 agtgtttgttttgtgtccaatgtctgtg 37497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 37491848 - 37491927
Alignment:
Q  51 cggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgt 130  Q
    |||||||||||||||||| || | |||||||||||||  |  ||||||||||| | ||||||||| ||||||||||||||    
T  37491848 cggtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatcagtatcgatgtgtcagtgt 37491927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 45000847 - 45000893
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaatt 105  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 18571030 - 18570978
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    ||||| |||| |||| ||||||||||||| || ||||||||||||||||||||    
T  18571030 gacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 31026753 - 31026701
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||||||||| |||| ||||||||||||| || |||||||| |||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattattatc 31026701  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 10250768 - 10250731
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatca 112  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  10250768 attacattgaattgtgttattttctcaaattattatca 10250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 21782835 - 21782912
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtccaatgtctgt 152  Q
    |||||| |||||| ||  ||||||||||||||||| ||||  ||  ||||||||||| |||| ||||||| |||||||    
T  21782835 attacactgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgt 21782912  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 5367279 - 5367200
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||| |||| | |||||||| |||| |||||||||| |||| |||||| |||||| ||  |||| ||||||||||||    
T  5367279 tgtcccggagtcggatatgtgtcg-tgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattatta 5367200  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 18840985 - 18841064
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    ||||||||||||| ||||||||| ||||||||||||||||  | | |||||| | |||| ||  ||||| |||||||||||    
T  18840985 tgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaattttttcaaattatta 18841064  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 40682024 - 40681988
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatc 111  Q
    ||||||||||||| || ||||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatc 40681988  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 20691383 - 20691305
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgtt 131  Q
    |||||||||||||||| |||| |||||| |||||| || |||||||||||||||||||||||  | | |||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgtt 20691305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 40150567 - 40150624
Alignment:
Q  54 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||| |||||||||| |||| ||||||||||||| |  ||||||||||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 45451640 - 45451556
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    |||| |||||||| |||||||||| |||| |||||||||| ||||||||| | |||| | ||  ||||||||||||||||| ||||    
T  45451640 tgtctcggtgtcggacatgtgtcg-tgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattattagcagt 45451556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 48202248 - 48202321
Alignment:
Q  37 tgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 110  Q
    |||||||||||||| ||||| |||||| |||| |||| |||||||| |||| ||  ||||||||||| ||||||    
T  48202248 tgtcgaacatgtgttggtgtttgacacagacacatataattacattaaattatgtgattttctcaaactattat 48202321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 13807228 - 13807172
Alignment:
Q  58 tgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||||||||| ||||||||| |||||||| ||  ||||||||||||| ||||||||    
T  13807228 tgacaccgacacatattattatattgaattatgtgattttctcaaattgttatcagt 13807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 25093582 - 25093505
Alignment:
Q  36 gtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    |||||| |||||||| | |||| |||||||||| |||| |||||| |||||||||  |||||||||||| |||| ||||    
T  25093582 gtgtcggacatgtgttg-tgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcattaacagt 25093505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 32384442 - 32384380
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgtt 137  Q
    |||||||| ||| ||| ||||||||||| |||||||||||  ||||||||| ||||| |||||    
T  32384442 attacatttaatcgtgtcattttctcaagttattatcagtgtcgatgtgtccgtgtttgtgtt 32384380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 40993307 - 40993364
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 87  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||| |||||| ||||||    
T  40993307 tgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaatt 40993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 2982189 - 2982114
Alignment:
Q  36 gtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    ||||| |||| ||||||||||| |||||| |||||| | |||| |||||||| || |||||||||| |||||||||    
T  2982189 gtgtctaacaagtgtcggtgtcagacaccaacagatgtgattagattgaattatgacattttctcagattattatc 2982114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 31808526 - 31808586
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 136  Q
    |||||||||| ||||| |||||||||||||||||||| ||  ||| ||||||||||||||||    
T  31808526 attacattgacttgtgtcattttctcaaattattatcggt-gcgacgtgtcagtgttcgtgt 31808586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 38134410 - 38134459
Alignment:
Q  62 accgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    ||||||| |||| ||||||||||||| || ||||||||||||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 598295 - 598189
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 128  Q
    ||||||||||||| ||| |||||| |||||||||||||||  ||  |||||||| ||||  |  ||||||| ||||||||| | ||  ||||||||||||    
T  598295 tgtcccggtgtcggacacgtgtcg-tgtctgacaccgacacttacaattacatttaattacgtgattttcttaaattattagcggtgtcgatgtgtcagt 598197  T
Q  129 gttcgtgt 136  Q
    || |||||    
T  598196 gtccgtgt 598189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 21247736 - 21247794
Alignment:
Q  58 tgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtac 116  Q
    ||||||| ||| | || |||||||||||||  | |||||||||||||||||||||||||    
T  21247736 tgacaccaacacacatgattacattgaattacgtcattttctcaaattattatcagtac 21247794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 12278922 - 12278838
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||||||||||  ||| | || |||||| ||||| |||| |||| |||||| |||||| || |||||||| ||||||||||||||    
T  12278922 tgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttcttaaattattatcagt 12278838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 44172907 - 44172944
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatca 112  Q
    ||||||||||||| || |||||||||||||||||||||    
T  44172907 attacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 2525845 - 2525897
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||||||||| |||| |||| |||||||| || ||||| ||||||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattattatc 2525897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 9482992 - 9482944
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattat 107  Q
    |||||||||| |||| |||||| |||||||||  |||||||||||||||    
T  9482992 gacaccgacacatataattacactgaattgtgtgattttctcaaattat 9482944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 21880239 - 21880160
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    ||||| ||||||| |||||||||| |||| ||||||||||  | | |||||| |||||| ||  |||||||||||||||||    
T  21880239 tgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaattttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 19637854 - 19637760
Alignment:
Q  30 gtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtc 125  Q
    |||||||||||| | |||| ||| |||| |||||||||| |||| ||||||||||||  || |||||||| ||||||||||| ||  |||||||||    
T  19637854 gtcccggtgtcggatatgtatcg-tgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc 19637760  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 38078633 - 38078739
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 128  Q
    ||||| ||||| |||||||||||| |||| ||||||||||  | | ||||||||||||| ||  ||||| ||||||||||| | ||  ||| ||||||||    
T  38078633 tgtcctggtgttgaacatgtgtcg-tgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagt 38078731  T
Q  129 gttcgtgt 136  Q
    ||||||||    
T  38078732 gttcgtgt 38078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 20157351 - 20157447
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtccaatgtctgtgct 155  Q
    |||||||||| |||| |||||| |||||| ||  ||||||||| ||||||| | ||  |||||||||||||  ||||| ||||||  ||||||||||    
T  20157351 gacaccgacacatatgattacactgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccggtgtctgtgct 20157447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 2896116 - 2896206
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 143  Q
    |||||||||||||||| ||||   |||| |||||| ||  ||||||||||||||||| | ||  ||  |||||||||| ||||||||||||    
T  2896116 gtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtcc 2896206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 11571627 - 11571591
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatc 111  Q
    ||||||||||||| || ||||||||||||||||||||    
T  11571627 attacattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 25452143 - 25452204
Alignment:
Q  51 cggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    |||||||||||||||||| |||  |||||| |||||| ||  ||||||||||||||||| ||||    
T  25452143 cggtgtctgacaccgacacata--attacactgaattatgagattttctcaaattattagcagt 25452204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 40747790 - 40747826
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatc 111  Q
    ||||||||||||| || ||||||||||||||||||||    
T  40747790 attacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 30502358 - 30502439
Alignment:
Q  27 catgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  |  |||||||||||||||||    
T  30502358 catgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30502439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 30542701 - 30542782
Alignment:
Q  27 catgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||| |||||| |||||||||| |||| |||||||||| |||| |||||| ||||||  |  |||||||||||||||||    
T  30542701 catgtcccagtgtcggacatgtgtcg-tgtccgacaccgacacatataattacactgaattaagtgattttctcaaattatta 30542782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 17925173 - 17925224
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattat 110  Q
    |||||||||| |||||||||||||||||| ||  ||||||| ||||||||||    
T  17925173 gacaccgacacatattattacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 39424711 - 39424648
Alignment:
Q  47 gtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 110  Q
    ||||||||||||||||  ||||||| | | ||||||||||  || |||||||||||||||||||    
T  39424711 gtgtcggtgtctgacattgacagatgtgaatacattgaatcatgtcattttctcaaattattat 39424648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 43208276 - 43208327
Alignment:
Q  60 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||| ||||||||| ||||||||||||| || ||||||||||||||| ||||    
T  43208276 acacagacagatatgattacattgaattatgtcattttctcaaattactatc 43208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 3966561 - 3966511
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||||| |||| |||||| |||||||||  |||||||||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttctcaaattatta 3966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 41600945 - 41600871
Alignment:
Q  70 atattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcca 144  Q
    |||| |||| |||||||||||  |||||||||||||||||||| |   || |||| |||||||||||||| ||||    
T  41600945 atatgattatattgaattgtgtaattttctcaaattattatcaatgttgacgtgttagtgttcgtgttgtatcca 41600871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 11596472 - 11596521
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgt 124  Q
    ||||||||||||| || |||||||||||||||||||| ||| ||| ||||    
T  11596472 attacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 23012379 - 23012459
Alignment:
Q  28 atgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||||||||  |||||||||| ||||  ||||||||| |||| |||||||| |||| |   |||||||||||||||||    
T  23012379 atgtcccggtgtcagacatgtgtcg-tgtccaacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 28296386 - 28296334
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||||| ||| |||| | ||||||||||| || ||||||||||||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 33950201 - 33950111
Alignment:
Q  52 ggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 142  Q
    ||||||||||||||||| |||| |||||||| |||| ||  ||||||||||||||||| | |    || ||||||||||||||||| ||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgttgaagtgtcagtgttcgtgttatgtc 33950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 12077869 - 12077809
Alignment:
Q  76 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 136  Q
    |||||||||||| ||  ||||||||||||||||| |||||  || ||||||||||||||||    
T  12077869 ttacattgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 56049939 - 56049864
Alignment:
Q  54 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgt 130  Q
    ||||||||||||||| |||| ||||||||||| | || || ||||||||||||||||| ||  ||||||||| ||||    
T  56049939 tgtctgacaccgacacatatgattacattgaactatgtca-tttctcaaattattatcggtgtcgatgtgtccgtgt 56049864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 5654608 - 5654647
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  5654608 attacattgaattatgtcattttctcaaattattatcagt 5654647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 18513243 - 18513294
Alignment:
Q  60 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||| |||| |||| ||||||||||||| || ||||||||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 43299973 - 43300024
Alignment:
Q  60 acaccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||||| ||||||| ||||||||||||| ||  |||||||||||||||||||    
T  43299973 acaccggcagatatgattacattgaattatgtaattttctcaaattattatc 43300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 48139345 - 48139267
Alignment:
Q  35 ggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    |||||||||||||||||| ||||||||| | ||| |||| |||||||| |||| ||  ||| ||||||||||||| ||||    
T  48139345 ggtgtcgaacatgtgtcg-tgtctgacatcaacacatataattacattaaattatgagattatctcaaattattaacagt 48139267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 34515892 - 34515958
Alignment:
Q  76 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtc 142  Q
    ||||| |||||| || ||||||||  |||||||||| ||  ||| ||||||||||||||||||||||    
T  34515892 ttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtc 34515958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 10546190 - 10546153
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatca 112  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10546190 attacattgaattatgtcattttctcaaattattatca 10546153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 5225614 - 5225662
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattat 107  Q
    |||||||||| |||||||| ||||||||| || |||| |||||||||||    
T  5225614 gacaccgacacatattattgcattgaattatgtcattatctcaaattat 5225662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 8423690 - 8423769
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    ||||||||||||| |||  ||||| |||| ||||||||||  ||| |||||| |||||| ||  |||||||||||||||||    
T  8423690 tgtcccggtgtcggacagctgtcg-tgtccgacaccgacatttataattacactgaattatgtgattttctcaaattatta 8423769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 14465299 - 14465347
Alignment:
Q  63 ccgacagatattattacattgaattgtggcattttctcaaattattatc 111  Q
    |||||| |||| |||| |||||||| || ||||||||||||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatc 14465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 12985456 - 12985399
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattat 110  Q
    ||||| |||||||||| |||| ||||||||||||| ||  ||||||||||||||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 44462167 - 44462227
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 90  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44462167 tgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44462227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 44469700 - 44469760
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtg 90  Q
    ||||||||||||| |||||| ||| ||||||||||||||| |||| |||| |||||||||||    
T  44469700 tgtcccggtgtcggacatgtatcg-tgtctgacaccgacacatatgattaaattgaattgtg 44469760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 12606825 - 12606885
Alignment:
Q  54 tgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||||||||||||| |||| ||||||||||||| |   ||||||||||||||||| ||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattattagcagt 12606885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 7616866 - 7616904
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcag 113  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  7616866 attacattgaattgtgtcattttctcaaattatcatcag 7616904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 31236580 - 31236633
Alignment:
Q  61 caccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    |||||||| |||| ||||||||||||| ||  ||||||||||||||||| ||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattattagcagt 31236633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 3508108 - 3508056
Alignment:
Q  61 caccgacagatattattacattgaattgtggcattttctcaaattattatcag 113  Q
    |||| ||| |||| ||||||||||||| ||  |||||||||||||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 14134763 - 14134707
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||| ||||||||||| |||| |||||| |||||| ||  |||||||||||||||||    
T  14134763 gtgtttgacaccgacatatataattacactgaattatgtgattttctcaaattatta 14134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 28819246 - 28819194
Alignment:
Q  62 accgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||||| |||| ||| |||||| || || |||||||||||||||||||||||    
T  28819246 accgacacatatgattgcattgagttatgccattttctcaaattattatcagt 28819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 33405356 - 33405475
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagt 128  Q
    ||||| ||||||  |||||||||| |||| |||||||||| |||| |||||| | |||| ||   |||||||||||||||| |||  ||  |||||||||    
T  33405356 tgtccaggtgtcagacatgtgtcg-tgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattattaacagggccagtgtgtcagt 33405454  T
Q  129 gttcgtgttgtgtccaatgtc 149  Q
    || | ||| ||||||| ||||    
T  33405455 gtccatgtcgtgtccagtgtc 33405475  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 34201058 - 34201098
Alignment:
Q  70 atattattacattgaattgtggcattttctcaaattattat 110  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  34201058 atataattacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 28715382 - 28715303
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    ||||||||||||||||| |||||| |||| ||||||||||  | | |||||| |||||| || |||||| |||||||||||    
T  28715382 tgtcccggtgtcgaacacgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtcattttttcaaattatta 28715303  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 9617492 - 9617442
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||||| |||| ||||||||||||| ||  |||||||||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 12236746 - 12236688
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaatt 87  Q
    |||||||||| ||||||||||||||||| | ||| ||||| |||  |||||||||||||    
T  12236746 tgtcccggtgccgaacatgtgtcggtgtttaacatcgacacatacgattacattgaatt 12236688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 30851664 - 30851605
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagt 114  Q
    ||||| |||||||||| |||| ||||||||||||||||  ||||||| ||||||||| ||||    
T  30851664 gtgtccgacaccgacacatataattacattgaattgtg--attttcttaaattattagcagt 30851605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 9629441 - 9629392
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattatt 108  Q
    |||||||||| |||| ||||||||||||| ||  ||||||||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 2140499 - 2140535
Alignment:
Q  76 ttacattgaattgtggcattttctcaaattattatca 112  Q
    |||||||||||| || |||||||||||||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattattatca 2140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 7265588 - 7265644
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    ||||| |||||||||| |||| |||||| |||||| ||  |||||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattatta 7265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 7378043 - 7377991
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaatt 105  Q
    ||||| |||||||||| |||| ||||||||||||| ||  |||||||||||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 9024177 - 9024225
Alignment:
Q  59 gacaccgacagatattattacattgaattgtggcattttctcaaattat 107  Q
    ||||| |||| |||| ||||||||||||| || ||||||||||||||||    
T  9024177 gacactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10158051 - 10157995
Alignment:
Q  50 tcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaatta 106  Q
    ||||||||||  ||||||| || | ||||||||||||| || |||||||||||||||    
T  10158051 tcggtgtctggtaccgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 12627549 - 12627628
Alignment:
Q  29 tgtcccggtgtcgaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||| |||||||| |||||||| |||||| |||| ||||| ||||||||||| |||||| ||  ||||| ||| |||||||    
T  12627549 tgtctcggtgtcggacatgtgt-ggtgtccgacatcgacacatattattacactgaattatgtgattttttcacattatta 12627628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 13851800 - 13851704
Alignment:
Q  53 gtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtccaatgtc 149  Q
    ||||| |||| ||||| |||| |||||| ||||||  |  ||||||||||||||||| | ||  ||| |||||||||| ||||| |||| |||||||    
T  13851800 gtgtcagacatcgacacatataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgtc 13851704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 19040427 - 19040360
Alignment:
Q  41 gaacatgtgtcggtgtctgacaccgacagatattattacattgaattgtggcattttctcaaattatta 109  Q
    |||||||||||| |||| ||||| |||| |||| |||||| |||||| ||  |||||||||||||||||    
T  19040427 gaacatgtgtcg-tgtccgacacagacacatataattacactgaattatgtgattttctcaaattatta 19040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 7728 - 7685
Alignment:
Q  79 cattgaattgtggcattttctcaaattattatcagtaccgatgt 122  Q
    ||||||||| || |||||||||||||||||||||||||| ||||    
T  7728 cattgaattatgtcattttctcaaattattatcagtaccaatgt 7685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 8071 - 8131
Alignment:
Q  76 ttacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgt 136  Q
    ||||| |||||| || |||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  8071 ttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtccgtgt 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 240021 - 240073
Alignment:
Q  58 tgacaccgacagatattattacattgaattgtggcattttctcaaattattat 110  Q
    ||||||||||| |||| ||||||||||||| |   ||||||||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 225285 - 225353
Alignment:
Q  75 attacattgaattgtggcattttctcaaattattatcagtaccgatgtgtcagtgttcgtgttgtgtcc 143  Q
    ||||||||| ||| || |||||||||||||||||||| ||  ||  |||||||||| ||||| ||||||    
T  225285 attacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtcc 225353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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