View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0100_low_2 (Length: 386)

Name: NF0100_low_2
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0100_low_2
NF0100_low_2
[»] scaffold0234 (2 HSPs)
scaffold0234 (2-105)||(3083-3186)
scaffold0234 (2-105)||(11974-12077)
[»] scaffold0203 (1 HSPs)
scaffold0203 (2-105)||(24290-24393)
[»] chr5 (2 HSPs)
chr5 (2-105)||(24696253-24696356)
chr5 (2-105)||(19707981-19708084)
[»] scaffold0390 (1 HSPs)
scaffold0390 (2-105)||(7696-7799)
[»] chr8 (3 HSPs)
chr8 (2-105)||(22170830-22170933)
chr8 (2-105)||(28554225-28554328)
chr8 (2-105)||(24641987-24642090)
[»] chr6 (7 HSPs)
chr6 (6-105)||(27278058-27278157)
chr6 (6-105)||(27296550-27296649)
chr6 (6-105)||(27302949-27303048)
chr6 (2-105)||(27382014-27382117)
chr6 (2-105)||(27472397-27472500)
chr6 (2-105)||(29315191-29315294)
chr6 (2-105)||(17685231-17685334)
[»] chr4 (5 HSPs)
chr4 (2-105)||(10622095-10622198)
chr4 (6-102)||(26969812-26969908)
chr4 (2-105)||(19920182-19920285)
chr4 (6-105)||(5713289-5713388)
chr4 (2-105)||(18268410-18268513)
[»] chr3 (7 HSPs)
chr3 (2-105)||(10573353-10573456)
chr3 (6-105)||(13247949-13248048)
chr3 (2-105)||(15601647-15601750)
chr3 (2-105)||(15351746-15351849)
chr3 (2-105)||(18510263-18510366)
chr3 (2-105)||(18522004-18522107)
chr3 (1-88)||(6288915-6289002)
[»] chr7 (3 HSPs)
chr7 (3-103)||(11536825-11536925)
chr7 (2-103)||(12750169-12750270)
chr7 (2-105)||(15151785-15151888)
[»] scaffold0063 (1 HSPs)
scaffold0063 (7-105)||(4869-4967)
[»] scaffold0433 (1 HSPs)
scaffold0433 (10-102)||(6452-6544)
[»] scaffold0705 (1 HSPs)
scaffold0705 (6-105)||(554-653)
[»] chr1 (3 HSPs)
chr1 (2-105)||(3854569-3854671)
chr1 (2-105)||(27278507-27278610)
chr1 (2-105)||(22657984-22658087)
[»] scaffold0011 (1 HSPs)
scaffold0011 (129-321)||(49094-49286)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-105)||(110862-110963)


Alignment Details
Target: scaffold0234 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 3083 - 3186
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3083 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 3182  T
Q  102 tcga 105  Q
    ||||    
T  3183 tcga 3186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 11974 - 12077
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11974 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 12073  T
Q  102 tcga 105  Q
    ||||    
T  12074 tcga 12077  T

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Target: scaffold0203 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 24290 - 24393
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24290 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtg 24389  T
Q  102 tcga 105  Q
    ||||    
T  24390 tcga 24393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 24696253 - 24696356
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24696253 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtg 24696352  T
Q  102 tcga 105  Q
    ||||    
T  24696353 tcga 24696356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 19707981 - 19708084
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||    
T  19707981 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccaatgatattcttgaaggtattataatg 19708080  T
Q  102 tcga 105  Q
    ||||    
T  19708081 tcga 19708084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 7696 - 7799
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7696 catcattgtaactaatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 7795  T
Q  102 tcga 105  Q
    ||||    
T  7796 tcga 7799  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 22170933 - 22170830
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22170933 catcattgtaactcatttacaatgtttctttcgtctgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 22170834  T
Q  102 tcga 105  Q
    ||||    
T  22170833 tcga 22170830  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 28554328 - 28554225
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  28554328 catcattgtaactcatttacaatgtttctttcatccgtgttcaagaaacaatccatagtcttttaagacatccaaggatattcttgaaggtattctagtg 28554229  T
Q  102 tcga 105  Q
    ||||    
T  28554228 tcga 28554225  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 24642090 - 24641987
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||| ||||||||| | ||||||||  |||||||||||||||   ||||| ||||||| || || ||||||||||||| ||||| |||||    
T  24642090 catcattgtaactcctttacaatgttcctttcatccatgttcaagaaacaatcattagtcttttaagatattcatggatattcttgaaagtattctagtg 24641991  T
Q  102 tcga 105  Q
    ||||    
T  24641990 tcga 24641987  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 27278157 - 27278058
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27278157 attgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtgtcga 27278058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 27296649 - 27296550
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27296649 attgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtgtcga 27296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 27303048 - 27302949
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27303048 attgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtgtcga 27302949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 27382014 - 27382117
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  27382014 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctattgtcctttaagacatccaaggatattcttgaaggtattatagtg 27382113  T
Q  102 tcga 105  Q
    ||||    
T  27382114 tcga 27382117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 27472397 - 27472500
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  27472397 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctattgtcctttaagacatccaaggatattcttgaaggtattatagtg 27472496  T
Q  102 tcga 105  Q
    ||||    
T  27472497 tcga 27472500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 29315294 - 29315191
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29315294 catcattgtaacccatttacaatgtttctttcatcggtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 29315195  T
Q  102 tcga 105  Q
    ||||    
T  29315194 tcga 29315191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 17685231 - 17685334
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  17685231 catcattgtaacttatttacaatgtttctttcatccgtgtttaagaaacaatccatagtcctttaagacatccaaggatattcttgaaggtattctagtg 17685330  T
Q  102 tcga 105  Q
    ||||    
T  17685331 tcga 17685334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 10622095 - 10622198
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  10622095 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcttttaagacatccaaggatattcttgaaggtattatagtg 10622194  T
Q  102 tcga 105  Q
    ||||    
T  10622195 tcga 10622198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 26969908 - 26969812
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgt 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26969908 attgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtgt 26969812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 19920182 - 19920285
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19920182 catcattgtaactcatttacaatgtttctttcatccgtgttcaagaaacaattcatagtcctttaagacatccaaggatattcttgaaggtattctagtg 19920281  T
Q  102 tcga 105  Q
    ||||    
T  19920282 tcga 19920285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 5713388 - 5713289
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5713388 attgtaactcatttacaatgtttctttcatctgtgttcaagaaataatatatagtcctttaagacatccaaggattttcttgaaggtattatagtgtcga 5713289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 18268513 - 18268410
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    ||||||||||||| |||||||||| |||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||    
T  18268513 catcattgtaacttatttacaatgtttctttcatccgtgtttaagaaacaatccatagtcctttaagacatccaaggatattcttgaaggtattctagtg 18268414  T
Q  102 tcga 105  Q
    ||||    
T  18268413 tcga 18268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 10573353 - 10573456
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10573353 catcatcgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtg 10573452  T
Q  102 tcga 105  Q
    ||||    
T  10573453 tcga 10573456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 13248048 - 13247949
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13248048 attgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaacgtattatagtgtcga 13247949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 15601647 - 15601750
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  15601647 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatccatggatattcttgaaggtattatagtg 15601746  T
Q  102 tcga 105  Q
    ||||    
T  15601747 tcga 15601750  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 15351746 - 15351849
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  15351746 catcattgtaactcatttacaatttttctttcatctgtgttcaagaaacaatctatagtcttttaagacatctaaggatattcttgaaggtattatagtg 15351845  T
Q  102 tcga 105  Q
    ||||    
T  15351846 tcga 15351849  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 18510366 - 18510263
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||| |||||    
T  18510366 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatccatagtcctttaagacatcgaaggatattcttgaagatattctagtg 18510267  T
Q  102 tcga 105  Q
    ||||    
T  18510266 tcga 18510263  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 18522107 - 18522004
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||| |||||    
T  18522107 catcattgtaactcatttacaatgtttctttcatctgtgttcaagaaacaatccatagtcctttaagacatcgaaggatattcttgaagatattctagtg 18522008  T
Q  102 tcga 105  Q
    ||||    
T  18522007 tcga 18522004  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6288915 - 6289002
Alignment:
Q  1 tcatcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttga 88  Q
    ||||| || |||||| ||||||||||| ||||| | ||||||||||||| |||   ||||||||||||||||||| | || |||||||    
T  6288915 tcatccttataactcctttacaatgatcctttcgtttgtgttcaagaaataatccttagtcctttaagacatccatgaatgttcttga 6289002  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 11536825 - 11536925
Alignment:
Q  3 atcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgt 102  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11536825 atcattgtacctcatttacaatgtttctttcatctgtgttcaagaaacaatatatagtcctttaagacatccaaggatattcttgaaggtattatagtgt 11536924  T
Q  103 c 103  Q
    |    
T  11536925 c 11536925  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 12750270 - 12750169
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  12750270 catcattataactcatttacaatgtttctttcatccgtgttcaataaacaattcatagtcctttaagacatccaaggatattcttgaaggtattataatg 12750171  T
Q  102 tc 103  Q
    ||    
T  12750170 tc 12750169  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 15151888 - 15151785
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||| |||||    
T  15151888 catcattgtaactcattaacaatgtttctttcatccgtgttcaagaaacaatccatagtcctttaagacatccagggatattcttgaaggtattctagtg 15151789  T
Q  102 tcga 105  Q
    ||||    
T  15151788 tcga 15151785  T

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Target: scaffold0063 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 4967 - 4869
Alignment:
Q  7 ttgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4967 ttgtaactcatttacaatgtttctttcatttgtgttcaagaaacaatctatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 4869  T

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Target: scaffold0433 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 6544 - 6452
Alignment:
Q  10 taactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgt 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  6544 taactcatttacaatgtttctttcatctgtgttcaagaaacaatctatagtcctttaagacatcctaggattttcttgaaggtattatagtgt 6452  T

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Target: scaffold0705 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 554 - 653
Alignment:
Q  6 attgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgtcga 105  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  554 attgtaacacatttacaatatttctttcatctgtgttcaagaaacaatctatagtcttttaagacatcaaaggatattcttgaaggtattatagtgtcga 653  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 3854569 - 3854671
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||| |||||||||||||| |||||||||||||||||| |||||    
T  3854569 catcattgtaactcatttacaatgtttctttcatctgtgttcaggaaacaatccatagtcatttaagacatccaa-gatattcttgaaggtattctagtg 3854667  T
Q  102 tcga 105  Q
    ||||    
T  3854668 tcga 3854671  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 27278507 - 27278610
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||| ||||||||| |  |||||| |||||| ||||||||||   ||||||||||||||||||| |||||||||| || |||||  ||||    
T  27278507 catcattgtaactcctttacaatgttcatttcatttgtgttaaagaaacaatccttagtcctttaagacatccatggatattcttaaaagtattccagtg 27278606  T
Q  102 tcga 105  Q
    ||||    
T  27278607 tcga 27278610  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 22657984 - 22658087
Alignment:
Q  2 catcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtg 101  Q
    |||||||||||||| |||| |||| | |||||||| ||||||||||| |||    | ||||| ||||| || || || |||||||||| ||||| |||||    
T  22657984 catcattgtaactcctttaaaatgttcctttcatccgtgttcaagaaccaagccttggtcctctaagatattcatgggtattcttgaaagtattctagtg 22658083  T
Q  102 tcga 105  Q
    ||||    
T  22658084 tcga 22658087  T

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Target: scaffold0011 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 129 - 321
Target Start/End: Complemental strand, 49286 - 49094
Alignment:
Q  129 acattgtgggtcccttatccctgccagaccaccaatcattgacttcatcaattggacagatacatttgacctaactcatttatctaccagaggggtaacc 228  Q
    ||||||||| |||||||  ||||||||| | ||||||| ||| ||||||  |||||| ||||| |||||||| ||||||||| | || ||||| |  ||     
T  49286 acattgtggttcccttaatcctgccagatctccaatcaatgatttcatcctttggactgatacctttgaccttactcatttaccaactagaggagccact 49187  T
Q  229 ttcacttgggataacagaagatcaggtagaagacatatcaaacgaagattagatagaacaatagtgaacaataatatgcttgatctctgctcc 321  Q
    ||||| ||||| || |||||||| || |||||||| |||||  |||||||| | |||||||||||||||  ||||||||||||||||||||||    
T  49186 ttcacctgggacaatagaagatcggggagaagacacatcaagagaagattaaacagaacaatagtgaactctaatatgcttgatctctgctcc 49094  T

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Target: scaffold0032 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 110862 - 110963
Alignment:
Q  3 atcattgtaactcatttacaatgattctttcatctgtgttcaagaaacaatttatagtcctttaagacatccaaggatattcttgaaggtattatagtgt 102  Q
    ||||||||||||| ||||||||| ||||| |||| ||||||||||||||||   ||||||||||||| ||||| ||||||||||||| ||||| ||||||    
T  110862 atcattgtaactcctttacaatgtttctt-catccgtgttcaagaaacaatccttagtcctttaagatatccatggatattcttgaaagtattctagtgt 110960  T
Q  103 cga 105  Q
    |||    
T  110961 cga 110963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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