View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0100_low_20 (Length: 207)
Name: NF0100_low_20
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0100_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47391201 - 47391097
Alignment:
| Q |
1 |
tgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaa |
100 |
Q |
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| T |
47391201 |
tgggaaaacagaaaaagctaagctgcaaatggagatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaataagcagcgccaa |
47391102 |
T |
|
| Q |
101 |
aaaga |
105 |
Q |
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||||| |
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| T |
47391101 |
aaaga |
47391097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 40624941 - 40625032
Alignment:
| Q |
14 |
aaagctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaaga |
105 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40624941 |
aaagctaagctgcaaaaggagatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaataagcagcgccaaaaaga |
40625032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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