View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0100_low_3 (Length: 379)
Name: NF0100_low_3
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0100_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 108 - 379
Target Start/End: Original strand, 8065780 - 8066051
Alignment:
| Q |
108 |
acagcattttttaccaacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8065780 |
acagcattttttaccaacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttct |
8065879 |
T |
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| Q |
208 |
ttttcctttgaataccatcatcctcacttgattcacagctttctagaaaatcagagtctccattctcatcttcaaaatctaccgcagttgtcgcctcact |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8065880 |
ttttcctttgaataccatcatcctcacttgattcacaactttctagaaaatcagagtctccattctcatcttcaaaatctacctcagttgtcgcctcact |
8065979 |
T |
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| Q |
308 |
gttccttgatgcttcaacaccaataattgcctgacaagagttggatgactgagcaacagaagttgggttcac |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8065980 |
gttccttgatgcttcaacaccaataattgcctgacaagagttggatgactgagcaacaggagttgggttcac |
8066051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 114 - 379
Target Start/End: Complemental strand, 1390987 - 1390722
Alignment:
| Q |
114 |
ttttttaccaacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttctttttcc |
213 |
Q |
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| T |
1390987 |
ttttttaccaacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttctttttcc |
1390888 |
T |
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| Q |
214 |
tttgaataccatcatcctcacttgattcacagctttctagaaaatcagagtctccattctcatcttcaaaatctaccgcagttgtcgcctcactgttcct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1390887 |
tttgaataccatcatcctcacttgattcacagctttctagaaaatcagagtctccattctcatcttcaaaatctacctcagttgtcgcctcactgttcct |
1390788 |
T |
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| Q |
314 |
tgatgcttcaacaccaataattgcctgacaagagttggatgactgagcaacagaagttgggttcac |
379 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
1390787 |
tgatgcttcaacagcaataattgcctgacaagagttggatgactgagcaataggagttgggttcac |
1390722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 154 - 378
Target Start/End: Original strand, 28850057 - 28850281
Alignment:
| Q |
154 |
caaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttctttttcctttgaataccatcatcctcacttgattcacagctttctag |
253 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| ||||||||| |||||||| |
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| T |
28850057 |
caaatatcacaatctcatcatttccaggaaacttaaacctattgtatttcttatttttccttgcattaccatcctcctcacctgattcacaactttctag |
28850156 |
T |
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| Q |
254 |
aaaatcagagtctccattctcatcttcaaaatctaccgcagttgtcgcctcactgttccttgatgcttcaacaccaataattgcctgacaagagttggat |
353 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
28850157 |
aaaatctgagtctccattctcatcttcaaaatctagctaagttgtggcctcagtgttccttgatgcttcaacaccaacaatagcttgacaagagttggat |
28850256 |
T |
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| Q |
354 |
gactgagcaacagaagttgggttca |
378 |
Q |
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| T |
28850257 |
gactgagcaacaggagttaggttca |
28850281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 123 - 378
Target Start/End: Original strand, 48056705 - 48056960
Alignment:
| Q |
123 |
aacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttctttttcctttgaatac |
222 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48056705 |
aacaaagtagttgcaaaaatctgtccctcttcaaatatcacagtctcatcatttccaagaaacttaaacctattgtatttcttctttttcctttcaatac |
48056804 |
T |
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| Q |
223 |
catcatcctcacttgattcacagctttctagaaaatcagagtctccattctcatcttcaaaatctaccgcagttgtcgcctcactgttccttgatgcttc |
322 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| | |||||||||||||||| |
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| T |
48056805 |
catcatcctcacttgattcacaactttctagaaaatcagagtctccattctcatcttcaaaatctagctcagttgcggccttagtgttccttgatgcttc |
48056904 |
T |
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| Q |
323 |
aacaccaataattgcctgacaagagttggatgactgagcaacagaagttgggttca |
378 |
Q |
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|||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
48056905 |
aacaccaacaatagcctgacaacagttggatgactgagcaacaggagttgggttca |
48056960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 123 - 378
Target Start/End: Original strand, 9179021 - 9179276
Alignment:
| Q |
123 |
aacaaagcagttgcaaaaatctgtccctcttcaaatatcacagtctcatcattttcaggaaacttaaacctattgtatttcttctttttcctttgaatac |
222 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | ||| |
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| T |
9179021 |
aacaaagcagttgcaagtatctgtccctcttcaaataacacagtctcatcatttccaggaaacttaaacctattgtatttcttcttcttctttgcagtac |
9179120 |
T |
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| Q |
223 |
catcatcctcacttgattcacagctttctagaaaatcagagtctccattctcatcttcaaaatctaccgcagttgtcgcctcactgttccttgatgcttc |
322 |
Q |
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||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
9179121 |
catcatccttaattgattcacaactttctagaaaatcagagtctccattctcatcttcaaaatcttgttcagttgtggcctcagtgttccttgatgcttc |
9179220 |
T |
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| Q |
323 |
aacaccaataattgcctgacaagagttggatgactgagcaacagaagttgggttca |
378 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9179221 |
aacaccaacaatgacctgacaagagttggatgactgagcaacaggagttgggttca |
9179276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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