View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0100_low_5 (Length: 318)
Name: NF0100_low_5
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0100_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 26 - 309
Target Start/End: Complemental strand, 50029342 - 50029059
Alignment:
| Q |
26 |
ctttaggcaacaaaaagggtcgaagaacttaccaacacgtcctttagcaactcttggtcatgttatatttccaacgagagtatcatttgataaggtaatt |
125 |
Q |
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| T |
50029342 |
ctttaggaaacaaaaagggtcgaagaacttaccaacacgtcctttagcaactcttggtcatgttatatttccaacgagagtatcatttgataaggtaatt |
50029243 |
T |
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| Q |
126 |
aagcttgtgccaatgaagacgataatgtgannnnnnnattgtaaataaatttctaagcataccgaaaccaatgtcatccttgtcttattcgtttcgaaag |
225 |
Q |
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| T |
50029242 |
aagcttgtgccaatgaagacgataatgtgaggggggtattgaaaataaatttctaagcatactgaaaccaatgtcatccttgtcttattcgtttcgaaag |
50029143 |
T |
|
| Q |
226 |
tcaagaatgttttatcatgcacgcagaaaaacctgctatgcctaatcaaattgtacactgccttgctacaaatgattatcattg |
309 |
Q |
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| T |
50029142 |
tcaagaatgttttatcatgcacgcagaaaaacctgctatgcctaatcaaattgtacactgccttgctacaaatgattatcattg |
50029059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 26 - 308
Target Start/End: Original strand, 7699253 - 7699534
Alignment:
| Q |
26 |
ctttaggcaacaaaaagggtcg-aagaacttaccaacacgtcctttagcaactcttggtcatgttatatttccaacgagagtatcatttgataaggtaat |
124 |
Q |
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|||||||||||||||||||| | |||||||||||| || |||||||||||||| || || ||||| ||||||||||||| ||||||||||| || | |
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| T |
7699253 |
ctttaggcaacaaaaagggttggaagaacttaccagcatgtcctttagcaacttgtgttcctgttacatttccaacgagaatatcatttgattag----t |
7699348 |
T |
|
| Q |
125 |
taagcttgtgccaatgaagacgata--atgtgannnnnnnattgtaaataaatttctaagcataccgaaaccaatgtcatccttgtcttattcgtttcga |
222 |
Q |
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||||||||||||||||||||||||| | | | |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
7699349 |
taagcttgtgccaatgaagacgatatgagggaaaggtcggattgtacataaatttctaagcatactgaaaccaatgtcatccttgtcttatacgtttcga |
7699448 |
T |
|
| Q |
223 |
aagtcaagaatgttttatcatgcacgcagaaaaacctgctatgcctaatcaaattgtacactgccttgctacaaatgattatcatt |
308 |
Q |
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|| || ||||| ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7699449 |
aaatccagaatattttatcatgcacacagaaaaccctgctatgcctaatgaaattgtacactgccttgctacaaatgattatcatt |
7699534 |
T |
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