View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0100_low_6 (Length: 302)
Name: NF0100_low_6
Description: NF0100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0100_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 62 - 291
Target Start/End: Complemental strand, 41962790 - 41962561
Alignment:
| Q |
62 |
gaatcgcgtatcgaattcaacggcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagca |
161 |
Q |
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| T |
41962790 |
gaatcgcgtatcgaattcaacagcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagca |
41962691 |
T |
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| Q |
162 |
atgccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962690 |
atgccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaa |
41962591 |
T |
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| Q |
262 |
tggggtgtttgtagatgatagcactggtgg |
291 |
Q |
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| T |
41962590 |
tggggtgtttgtagatgatagcaccggtgg |
41962561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 62 - 291
Target Start/End: Complemental strand, 1224264 - 1224035
Alignment:
| Q |
62 |
gaatcgcgtatcgaattcaacggcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagca |
161 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1224264 |
gaatcgcgtatcgaattcaacagcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaaaca |
1224165 |
T |
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| Q |
162 |
atgccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224164 |
atgccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaa |
1224065 |
T |
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| Q |
262 |
tggggtgtttgtagatgatagcactggtgg |
291 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
1224064 |
tggggtgtttgtagatgatagcaccggtgg |
1224035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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