View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0101_low_2 (Length: 307)
Name: NF0101_low_2
Description: NF0101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0101_low_2 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 40812159 - 40812379
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812159 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
40812258 |
T |
|
| Q |
187 |
aacatccaaaagctagtaatctctttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatc |
286 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40812259 |
aacatccaaaaactagtaatctctttttgatggtgcagagaacattgccttgtagatccatgagattcacttctcttccacctttcttgtcatagttatc |
40812358 |
T |
|
| Q |
287 |
aactcgataaatgatgttacc |
307 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
40812359 |
aactcgataaacgatgttacc |
40812379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 110 - 307
Target Start/End: Original strand, 40817341 - 40817538
Alignment:
| Q |
110 |
acatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagtaatctc |
209 |
Q |
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||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
40817341 |
acatcttttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtc |
40817440 |
T |
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| Q |
210 |
tttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatcaactcgataaatgatgttacc |
307 |
Q |
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|||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
40817441 |
tttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttacc |
40817538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 40807062 - 40807282
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | ||| | ||||| ||||||||||||| |||||||| |
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| T |
40807062 |
attttcccagagaaaaccttatgacatcttttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttccc |
40807161 |
T |
|
| Q |
187 |
aacatccaaaagctagtaatctctttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatc |
286 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||| |||||| ||||| |||||||| |
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| T |
40807162 |
aacatccaaaagctagtaatgtctttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttaccttttttgtcgtagttatc |
40807261 |
T |
|
| Q |
287 |
aactcgataaatgatgttacc |
307 |
Q |
| |
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||| ||||||| ||||||||| |
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| T |
40807262 |
aacacgataaacgatgttacc |
40807282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 40825884 - 40826007
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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|||||||| || | ||||||||||||||||||||||| ||||||||||| |||| ||| ||||| ||| | |||||||||||||||||||||||||||| |
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| T |
40825884 |
attttccctgatataaccttatgacatcttttaactttgaaccatggttgctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttccc |
40825983 |
T |
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| Q |
187 |
aacatccaaaagctagtaatctct |
210 |
Q |
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| |||||||||||||||||||||| |
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| T |
40825984 |
agcatccaaaagctagtaatctct |
40826007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 40805357 - 40805463
Alignment:
| Q |
104 |
cttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagt |
203 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
40805357 |
cttatgacatcttttgacttgaaaccatggttgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagt |
40805456 |
T |
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| Q |
204 |
aatctct |
210 |
Q |
| |
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||||||| |
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| T |
40805457 |
aatctct |
40805463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 40805588 - 40805682
Alignment:
| Q |
209 |
ctttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatcaactcgataaatgatgt |
303 |
Q |
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||||||||||| ||||||||| || |||| ||||| ||| ||||| |||||||||||||| || |||||||||| |||||||| |||| ||||| |
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| T |
40805588 |
ctttttgatggtgcagagaacgtttccttttagattcatgagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgt |
40805682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 40826114 - 40826199
Alignment:
| Q |
222 |
cagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatcaactcgataaatgatgttacc |
307 |
Q |
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||||||||||| |||| ||||| ||| ||| | ||||| |||||||| || |||||||||| ||||||||||||| |||| |||| |
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| T |
40826114 |
cagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctacc |
40826199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 110 - 307
Target Start/End: Complemental strand, 15023 - 14826
Alignment:
| Q |
110 |
acatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagtaatctc |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
15023 |
acatcttttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtc |
14924 |
T |
|
| Q |
210 |
tttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacctttcttgtcatagttatcaactcgataaatgatgttacc |
307 |
Q |
| |
|
|||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
14923 |
tttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttacc |
14826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 7567 - 7344
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | ||| | ||||| ||||||||||||| |||||||| |
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| T |
7567 |
attttcccagagaaaaccttatgacatcttttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttccc |
7468 |
T |
|
| Q |
187 |
aacatcc-aaaagctagtaatctc-tttttgatggcgcagagaacattgccttgtagatccattagattcacttctcttccacc-tttcttgtcatagtt |
283 |
Q |
| |
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||||||| ||||||||||||| || |||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||| ||||| ||||| |
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| T |
7467 |
aacatccaaaaagctagtaatgtcttttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttacctttttttgtcgtagtt |
7368 |
T |
|
| Q |
284 |
atcaactcgataaatgatgttacc |
307 |
Q |
| |
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|||||| ||||||| ||||||||| |
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|
| T |
7367 |
atcaacacgataaacgatgttacc |
7344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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