View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0101_low_3 (Length: 301)
Name: NF0101_low_3
Description: NF0101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0101_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 52 - 291
Target Start/End: Complemental strand, 12868145 - 12867906
Alignment:
| Q |
52 |
attggtgaacattcttcttttctcatgcgtgtgcagtttctttgatctttgtttacttctgtttgtttgacaggatttgttcacctatacaaagtgatat |
151 |
Q |
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| T |
12868145 |
attggtgaacattcttcttttctcatgcgtgtgcagtttctttgatctttgtttacttctgtttgtttgacaggatttgttcacctatacaaagtgatat |
12868046 |
T |
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| Q |
152 |
tagggctttactttattttggactattctaattgtggcaacatgatctatagccacatgaatcttccttgaggaaggtatgttacgtagatagaggttta |
251 |
Q |
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| T |
12868045 |
tagggttttactttattttggactattctaaatgtggcaacatgatctatagccacatgaatcttccttgaggaaggtatgttacgtagatagaggttta |
12867946 |
T |
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| Q |
252 |
attgaggaaggtatgttaagtaaacttggaattggttcat |
291 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
12867945 |
attgaggaaggtatgttaagtaaacttggaatttgttcat |
12867906 |
T |
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