View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0101_low_4 (Length: 262)
Name: NF0101_low_4
Description: NF0101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0101_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 41705132 - 41705274
Alignment:
| Q |
45 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaata--ctgtttaaccaaatg |
142 |
Q |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctc--ctctctgtattcaagttccaacac-aaaaaaacaaataccctgtttaaccaaatg |
41705228 |
T |
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| Q |
143 |
gcttctcccctgttatttctcctcatcatcacactcttcatctcac |
188 |
Q |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcac |
41705274 |
T |
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