View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0101_low_5 (Length: 257)
Name: NF0101_low_5
Description: NF0101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0101_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36611571 - 36611801
Alignment:
| Q |
1 |
tgtctcttagtctcatttcaaattactaaatatagaccctaaaatccatctttacatatctaatgtaaaagcaaaaagtcaaccacctttcacaatccaa |
100 |
Q |
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| T |
36611571 |
tgtctcttagtctcatttcaaattactaaatatagaccctaaaatccatctttacatatctaatgtaaaagcaaaaagtcaaccacctttcacaatccaa |
36611670 |
T |
|
| Q |
101 |
tatgaaaacaaagatacacacataaagtcaagcatctagtggtgtatctcaccttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36611671 |
tatgaaaacaaagatacacacataaagtcaaggatctagtggtgtatctcaccttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaat |
36611770 |
T |
|
| Q |
201 |
tctcgcaattagagccatctacaaatacaat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36611771 |
tctcgcaattagagccatctacaaatacaat |
36611801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 18641524 - 18641448
Alignment:
| Q |
145 |
tatctcaccttctcaacccaagcctccttgaattcaacaatgtaaggatgcttaattctcgcaattagagccatcta |
221 |
Q |
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| T |
18641524 |
tatctcaccttctcaacccaagcctccttgaattcaacaatgtaagggtgcctgattcttgcaataagagccatcta |
18641448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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