View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0101_low_6 (Length: 248)
Name: NF0101_low_6
Description: NF0101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0101_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 54474231 - 54474009
Alignment:
| Q |
23 |
gcatactcaggagccatatacctgaattgatagccatatacaagtaggtagaaattatttggaatttgcaaaagattcatacataaataaatgtatatag |
122 |
Q |
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| T |
54474231 |
gcatactcaggagccatatacctgaattgatagccatatacaagtaggtagaaattatttggaatttgcaaaagattcatacataaataaatgtatatag |
54474132 |
T |
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| Q |
123 |
tttgggttgaattattattggttaattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatc |
222 |
Q |
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| T |
54474131 |
tttgggttgaattattat---ttaattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatc |
54474035 |
T |
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| Q |
223 |
tgccacctaaatggatagaatcactt |
248 |
Q |
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| T |
54474034 |
tgccacctaaatggatagaatcactt |
54474009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 33145051 - 33145136
Alignment:
| Q |
146 |
aattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccaccta |
231 |
Q |
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| T |
33145051 |
aattacccgaatgttcccatgacacgagttgagacatgtgtattagtatcggtagtcaacttagccaatccaaaatcagccaccta |
33145136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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