View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0102_high_3 (Length: 258)
Name: NF0102_high_3
Description: NF0102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0102_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 36606574 - 36606339
Alignment:
| Q |
18 |
ggacatcatcggttacctaa---tcatctgccacatgtttctagagagcctttgaaggcttttgaaagtagtaccaaaggaatgcaagcaaccagcaaca |
114 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36606574 |
ggacatcatcggttgcctaacggtcatctgccacatgtttctaaagagcctttgaaggcttttgaaagtagtaccaaaggaatgcaagcaaccagcaac- |
36606476 |
T |
|
| Q |
115 |
attctgtttcatcttcagtctccattcaaggatttgaactttttgacttcgcaaacacttttattgacttgagtgaaccaacaccccctgaacatgggag |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36606475 |
--tctgtttcatcttcagtctctattcaaggatttgaactttttgactttgcaaacacttttattgacttgagtgaaccaacaccccctgaacatgggag |
36606378 |
T |
|
| Q |
215 |
ttttaatcacactgaaattgtgggatcacgtgccaacag |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36606377 |
ttttaatcacactgaaattgtgggatcacgtgccaacag |
36606339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1621 times since January 2019
Visitors: 1426