View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0102_low_3 (Length: 308)
Name: NF0102_low_3
Description: NF0102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0102_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 25205485 - 25205342
Alignment:
| Q |
1 |
tcgtgagcatcgtgcatatcatcttcggagtccattgaagaagaaagaaaaaattcggatcccaaatcgagaatctagggcttgagaaattggggaattt |
100 |
Q |
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| T |
25205485 |
tcgtgagcatcgtgcatatcatcttcggagtccattgaagaagaaagaacaaattcggatcccaaatcgagaatctagggcttgagaaattggggaattt |
25205386 |
T |
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| Q |
101 |
aaagagagaagaagaagaaaaaagtgttgctttgctttattgatt |
145 |
Q |
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| T |
25205385 |
aaagagagaagaagaa-aaaaaagtgttgctttgctttattgatt |
25205342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 30907576 - 30907637
Alignment:
| Q |
238 |
agccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgt |
299 |
Q |
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| T |
30907576 |
agccattcctgcctgcgttcctcagaccattctcgataagatccaatctccaagtggtttgt |
30907637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 39537782 - 39537857
Alignment:
| Q |
233 |
ataagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtc |
308 |
Q |
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| T |
39537782 |
ataagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtc |
39537857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 1552832 - 1552902
Alignment:
| Q |
235 |
aagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgc |
305 |
Q |
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| T |
1552832 |
aagagccattcttgcctgcattcctctgaccattctcggtatgatccaatctccaagtgtttcgtaattgc |
1552902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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