View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0103-INSERTION-2 (Length: 856)
Name: NF0103-INSERTION-2
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0103-INSERTION-2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 120 - 856
Target Start/End: Original strand, 25002832 - 25003546
Alignment:
| Q |
120 |
tatgtgaattgtaagcattagattgcttttcactcacaggtacatatattaaatgtaaacgagataacattttctgttgggaaatgctgcataatttccc |
219 |
Q |
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| T |
25002832 |
tatgtgaattgtaagcattacatt-cttttcactcgcaggtacatatattaaatgtaaacgagataacattttctgttgggaaatgctgcataatttccc |
25002930 |
T |
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| Q |
220 |
tctccgtgaactcaaaaataggaactaagcggaaaacgtaaaatatcacacaagaacgtaaaatatcacacaagaaaattttagtagcatgaaaaacctt |
319 |
Q |
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| T |
25002931 |
tctccgtgaactcaaaaataggaactaagcggaaaacgtaaaatatcacacaagaacgtaaaatatcacacaagaaaattttagtagcatggaaaacctt |
25003030 |
T |
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| Q |
320 |
ctcaattttctcaatgttaataaggaaaaaccacgggatttgtggaccctgttgaactccactgtaataatgaccggagatacaaatttttacctttaag |
419 |
Q |
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| T |
25003031 |
ctcaatcttctcaatgtgaataaggaaaaaccacgggatttgtggaccctcttgaactccactgtaataatgactggagatacaaatttttacct----- |
25003125 |
T |
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| Q |
420 |
tagacctaactatgtatctt-atttgtagatacaattcttacaaattatttcattata-nnnnnnnnnctttctcaaaacactaattttctcgtaactct |
517 |
Q |
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| T |
25003126 |
tagatcaaactatgtatcttaatttgtagatacaattcttacaaattacttcattatattttttttttctttctcaaaacactatttttctcgtaactct |
25003225 |
T |
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| Q |
518 |
cttgtgaggaactccaatttttctctcaactctgagattatgttgtgcttcgttactttgattaggtttgttgaaaccaagtgcattaagtgtatggttc |
617 |
Q |
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| T |
25003226 |
cttgtgaggaactccaatttttctctcaactctgagattatgttgttcttcgttactttgattaggtttgttgaaaccaagtgcattaagtgtatggttc |
25003325 |
T |
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| Q |
618 |
tcattttccaacttaggctatcaattgccaagcttttcaaattgtttctaacacattggaatttagtcaccacatgctatgatccataggcatactagag |
717 |
Q |
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| T |
25003326 |
tcattttcctacttaggctatcaattgccaagcttttcaaattgtttctaacacattggaatttagtcacca------------------catactagag |
25003407 |
T |
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| Q |
718 |
gagaaatttaacatttaatttggtgcactttttgtcgttggattccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggtt |
817 |
Q |
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| T |
25003408 |
gagaaatttaacatttaatttggtgcactttttgtcgttggattccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggtt |
25003507 |
T |
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| Q |
818 |
gctgtatagcttgcatattctttacaaaccttttcattt |
856 |
Q |
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| T |
25003508 |
gctgtatagctttcatattctttacaaaccttttcattt |
25003546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 25002721 - 25002797
Alignment:
| Q |
46 |
atatgaaatatgagaatcactaataaaagaatttatatgtgtttattaatggatggatttattattcgctctcttat |
122 |
Q |
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| T |
25002721 |
atatgaaatatgagaatcactaataaaagaatttatatgtgtttataaatggatggatttattattcgctctcttat |
25002797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 25002660 - 25002705
Alignment:
| Q |
8 |
agaagttggttaaatgaacttaggattagaaaaaagtgatatgaaa |
53 |
Q |
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| T |
25002660 |
agaagttggttaaatgaacttaggattagaaaaaagtgatatgaaa |
25002705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 24984360 - 24984327
Alignment:
| Q |
17 |
ttaaatgaacttaggattagaaaaaagtgatatg |
50 |
Q |
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| T |
24984360 |
ttaaatgaacttaggattagaaaatagtgatatg |
24984327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 762 - 821
Target Start/End: Complemental strand, 33811297 - 33811238
Alignment:
| Q |
762 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
821 |
Q |
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| T |
33811297 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctg |
33811238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 762 - 821
Target Start/End: Complemental strand, 33816215 - 33816156
Alignment:
| Q |
762 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
821 |
Q |
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| T |
33816215 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctg |
33816156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 627
Target Start/End: Original strand, 1104789 - 1104828
Alignment:
| Q |
588 |
ttgaaaccaagtgcattaagtgtatggttctcattttcca |
627 |
Q |
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| T |
1104789 |
ttgaaaccaagtgcattaaatgtatggttctcattttcca |
1104828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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