View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0103-INSERTION-4 (Length: 584)
Name: NF0103-INSERTION-4
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0103-INSERTION-4 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 7 - 583
Target Start/End: Original strand, 25861356 - 25861932
Alignment:
| Q |
7 |
agaaaagattgatgaaatcatgaatgaatttctaaaggattataaggagggttcacatgaaaccaaaggttggcctcaatcaaattctgcatacattgtc |
106 |
Q |
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| T |
25861356 |
agaaaagattgatgaaatcatgaatgaatttctaaaggattataaggagggttcacatgaaaccaaaggttggcctcaatcaaattctgcatacattgtt |
25861455 |
T |
|
| Q |
107 |
tcaaaagttgctcttaatgcctacacaagagttcttgccaagaagtacccttctttttcgataaatgctatttctcctggttttgtcaaaactgatatga |
206 |
Q |
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| T |
25861456 |
tcaaaagttgctcttaacgcctacacaagagttcttgccaagaagtacccttctttttcgataaatgctatttcccctggttttgtgaaaactgatatga |
25861555 |
T |
|
| Q |
207 |
ctcatggtaatggtgctctaacatctgatgaaggtgctgaacctattgtgaaactggcactacaagatggtagtccttccggtctctttttctctcgagg |
306 |
Q |
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| T |
25861556 |
ctcatggtaatggtgctctaacatctgatgaaggtgctgaacctattgtgaaattggcactacaagatggtagtccttctggtctctttttctctcgagg |
25861655 |
T |
|
| Q |
307 |
cgaagagaaatcattttgatcgacgattaatttcagcttggaaataaaacatttgtctaaactagtcgtgttttaaactagtttttatgctataaacaat |
406 |
Q |
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| T |
25861656 |
cgaagagaaatcattttgatcgacgattaatttcagcttggaaataaaatatttgtctaaaccagtcgtgttttaaactagtttttatgctataaacaat |
25861755 |
T |
|
| Q |
407 |
gatgttcattctaatgttaaactttatttacaatcttcttaataaatgggattggaataatatgttgttgattgtgttttatacttttatttgtgagaca |
506 |
Q |
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| T |
25861756 |
gatgttcattctaatgttaaactttatttacattcttcttattaaatgggattggaataatatgctgttgattgtgttttatacttttatctgtgagaca |
25861855 |
T |
|
| Q |
507 |
gacgataaacaatggagtctaggatggaacacaattcattgtctataccgagttatgaaacagagtgaagtactttt |
583 |
Q |
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| T |
25861856 |
gacgataaacaatggagtctagtatggaacacaattcattgtctataccgagttatgaaacagaatgaagtactttt |
25861932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 11871218 - 11871087
Alignment:
| Q |
7 |
agaaaagattgatgaaatcatgaatgaatttctaaaggattataaggagggttcacatgaaaccaaaggttggcctcaatcaaat---tctgcatacatt |
103 |
Q |
| |
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|||||||||||||||| | ||||| ||||||||||||||| ||| ||||| |||| |||| ||||||||||||| | ||| ||| | |||||| |
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| T |
11871218 |
agaaaagattgatgaagttttgaatcaatttctaaaggattttaaagaggggtcactagaaaacaaaggttggcctgataataatttgtctacttacatt |
11871119 |
T |
|
| Q |
104 |
gtctcaaaagttgctcttaatgcctacacaag |
135 |
Q |
| |
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| T |
11871118 |
atctcaaaagttgctctaaatgcctatacaag |
11871087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 11865543 - 11865468
Alignment:
| Q |
7 |
agaaaagattgatgaaatcatgaatgaatttctaaaggattataaggagggttcacatgaaaccaaaggttggcct |
82 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||||| |||| ||| |||||||||| |||| ||| ||||||||| |
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| T |
11865543 |
agaaaagattgatgaagttttgaataaatttctaaacgattttaatgagggttcactagaaaacaatggttggcct |
11865468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 338
Target Start/End: Complemental strand, 11865321 - 11865203
Alignment:
| Q |
223 |
tctaacatctgatgaaggtgctgaacctattgtgaaactggca---ctacaagatggtagtccttccggtctctttttctctcgaggcgaagagaaatca |
319 |
Q |
| |
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||||||| ||||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || |||| |||||| | || | |||||||| || |
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| T |
11865321 |
tctaacacctgatgaaggtgctgaatcaattgtgaatttggcattgctacatgatggtagtccgtctggtcacttttttgttagaagtgaagagaagcca |
11865222 |
T |
|
| Q |
320 |
ttttgatcgacgattaatt |
338 |
Q |
| |
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|||||||| | |||||||| |
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|
| T |
11865221 |
ttttgatcaaggattaatt |
11865203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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