View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0103-INSERTION-5 (Length: 450)
Name: NF0103-INSERTION-5
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0103-INSERTION-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 54032232 - 54032677
Alignment:
| Q |
8 |
aaactaatatgcctagttatactaatatttgttttgtttacttaaaattcaatgaatgacatt---ttctggtgtttgaatgattagatttgagaaaatc |
104 |
Q |
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| T |
54032232 |
aaactaatatgcctagttatactaatatttgttttgtttacttaaaattaaatgaatgacattattttctggtgtttgaatgattagatttgagaaaatc |
54032331 |
T |
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| Q |
105 |
aatcttcgaagtttaagaaacgtggcaaagatattaggaacaatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttac |
204 |
Q |
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| T |
54032332 |
aatcttcgaagtttaagaaacgtggcaaagatattaggaacaatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttac |
54032431 |
T |
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| Q |
205 |
atatggagtactttcttcctgattccaaacatctcactgcaagtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttg |
304 |
Q |
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| T |
54032432 |
atatggagttctttcttcctgattccaaacatctcactgcaagtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttg |
54032531 |
T |
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| Q |
305 |
gtcatgttggatgatcatgcaggtaaaaaattaataaaaccagaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaa |
404 |
Q |
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| T |
54032532 |
gtcatgttggatgatcatgcaggtaaaaaattaataaaaccagaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaa |
54032631 |
T |
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| Q |
405 |
tttcaacacaggtgccgatttcttcatcttgcccggatcatatatt |
450 |
Q |
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| T |
54032632 |
tttcaacacaggtgccgatttcttcatcttgcccggatcatatatt |
54032677 |
T |
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