View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0103-INSERTION-6 (Length: 690)
Name: NF0103-INSERTION-6
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0103-INSERTION-6 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 35802364 - 35802113
Alignment:
| Q |
7 |
atgttttactatctgtggcgcccgatgcagcgactgcttttatgggtgttttgattttctttgctctgcaaaatgcaggccataatctcaaatggcttat |
106 |
Q |
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| T |
35802364 |
atgttttactatctgtagcgcccgatgcagcgactgcttttatgggtgttttgattttctttgctctgcaaaatgcaggccataatctcaaatggcttat |
35802265 |
T |
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| Q |
107 |
tgcaagttttgaactagaaagtagataagaattcaaaaggtaaaaattcagtttaagtgctactaaatatggcagacgtacttgcaaataacttttatgc |
206 |
Q |
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| T |
35802264 |
tgcaagttttaaactagaaagtagataagaattcaaagggtaaaagttcagtttaagtgctactaaatattgcagacgtacttgcaaataacttttatgc |
35802165 |
T |
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| Q |
207 |
taccaatatcaataagtgaacttctctcttacctttattttggattgattaa |
258 |
Q |
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| T |
35802164 |
taccaatatcaataagtgaacttctctcttacctttagtttggattgattaa |
35802113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 257 - 417
Target Start/End: Complemental strand, 35802051 - 35801891
Alignment:
| Q |
257 |
aaatggactgctactattttggtttggaaatatgaactttactcttaaccattccattatattttacctatgctgaaggttaagtatagatgtttcaaaa |
356 |
Q |
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| T |
35802051 |
aaatggactgctactattttggtttggaaatatgaactttactcttaaccattccattatattttacctatgctgaaggttaagtatagatgtttcaaaa |
35801952 |
T |
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| Q |
357 |
tgtcaatcatatcctaaaacgtggcaaaacaaacacaatgttgacagaattttcaacatag |
417 |
Q |
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| T |
35801951 |
tgtcaatcatatactaaaacgtgacaaaacaaacacaatgttgacagaattttcaacatag |
35801891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 35801840 - 35801767
Alignment:
| Q |
451 |
gtataattaaactggtataggatgcgtttgttttaactttnnnnnnntaaattgtgttggaataacttctacta |
524 |
Q |
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| T |
35801840 |
gtataattaaactggtataggatgcgtttgttttaactttaaaaaaataaattgtgttggaataacttctacta |
35801767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 643 - 686
Target Start/End: Complemental strand, 35801647 - 35801604
Alignment:
| Q |
643 |
aaaaacatattaagtataagcgttaatcataagccgagtttccc |
686 |
Q |
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| T |
35801647 |
aaaaacatattaagtataagcgttaatcataagccgagtttccc |
35801604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 56046963 - 56047022
Alignment:
| Q |
42 |
gcttttatgggtgttttgattttctttgctctgcaaaatgcaggccataatctcaaatgg |
101 |
Q |
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| T |
56046963 |
gcttttatgggtgttttgattttctttgctctgcaaaatgcaggccatactctcaaatgg |
56047022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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