View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0103_high_3 (Length: 223)

Name: NF0103_high_3
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0103_high_3
NF0103_high_3
[»] chr8 (6 HSPs)
chr8 (22-80)||(21579887-21579945)
chr8 (22-80)||(29763549-29763607)
chr8 (22-80)||(42560208-42560266)
chr8 (30-80)||(3273252-3273302)
chr8 (145-181)||(21580010-21580046)
chr8 (145-181)||(41680926-41680962)
[»] chr5 (13 HSPs)
chr5 (22-80)||(12122202-12122260)
chr5 (24-80)||(31455193-31455249)
chr5 (24-80)||(31455806-31455862)
chr5 (22-80)||(21555060-21555118)
chr5 (22-80)||(21557726-21557784)
chr5 (22-80)||(30615868-30615926)
chr5 (22-80)||(36460283-36460341)
chr5 (35-80)||(24212481-24212526)
chr5 (35-80)||(35852736-35852781)
chr5 (145-181)||(12122325-12122361)
chr5 (145-181)||(21555183-21555219)
chr5 (145-181)||(30615768-30615804)
chr5 (145-181)||(31455702-31455738)
[»] chr4 (4 HSPs)
chr4 (22-80)||(33186215-33186273)
chr4 (145-181)||(33186114-33186150)
chr4 (22-80)||(13844685-13844744)
chr4 (35-80)||(15880810-15880855)
[»] scaffold0737 (1 HSPs)
scaffold0737 (22-80)||(6359-6417)
[»] scaffold0071 (1 HSPs)
scaffold0071 (22-80)||(14453-14511)
[»] chr7 (8 HSPs)
chr7 (22-80)||(11085112-11085170)
chr7 (22-80)||(30820937-30820995)
chr7 (31-80)||(11092850-11092899)
chr7 (23-80)||(15213812-15213869)
chr7 (29-80)||(36685938-36685989)
chr7 (35-80)||(9320423-9320468)
chr7 (22-80)||(15439398-15439457)
chr7 (145-181)||(36686054-36686090)
[»] chr3 (7 HSPs)
chr3 (22-80)||(15447681-15447739)
chr3 (22-80)||(11913034-11913092)
chr3 (22-80)||(31224635-31224693)
chr3 (39-80)||(6808250-6808291)
chr3 (145-181)||(31224758-31224794)
chr3 (145-181)||(31415416-31415452)
chr3 (52-80)||(49969963-49969991)
[»] chr2 (5 HSPs)
chr2 (23-80)||(7672240-7672297)
chr2 (23-80)||(24865452-24865509)
chr2 (30-80)||(2524418-2524468)
chr2 (34-80)||(22501102-22501148)
chr2 (34-80)||(22509036-22509082)
[»] scaffold0599 (2 HSPs)
scaffold0599 (22-80)||(4728-4786)
scaffold0599 (22-80)||(310-368)
[»] scaffold1351 (1 HSPs)
scaffold1351 (23-80)||(1679-1736)
[»] chr1 (3 HSPs)
chr1 (24-80)||(12328538-12328594)
chr1 (35-80)||(8885510-8885555)
chr1 (43-80)||(51274290-51274327)
[»] chr6 (6 HSPs)
chr6 (22-80)||(20734128-20734186)
chr6 (22-80)||(27851315-27851373)
chr6 (37-80)||(22421080-22421123)
chr6 (29-80)||(34296957-34297008)
chr6 (35-80)||(2201232-2201277)
chr6 (22-80)||(25956537-25956596)
[»] scaffold0395 (1 HSPs)
scaffold0395 (35-80)||(11008-11053)
[»] scaffold0810 (1 HSPs)
scaffold0810 (22-80)||(3077-3136)
[»] scaffold0116 (2 HSPs)
scaffold0116 (22-80)||(43700-43759)
scaffold0116 (22-80)||(47620-47679)
[»] scaffold0434 (1 HSPs)
scaffold0434 (52-80)||(6770-6798)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 21579887 - 21579945
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21579887 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 21579945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 29763549 - 29763607
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29763549 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 29763607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 42560208 - 42560266
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42560208 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 42560266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 3273302 - 3273252
Alignment:
Q  30 atgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||| |||  ||||||  |||||||||||||||||||    
T  3273302 atgaataagatgattaatgttatggatttaagttgatgattaaatgtgaaa 3273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 21580010 - 21580046
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  21580010 gatggtgacttgctgcatatgtttaaatgatgttgtc 21580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 41680926 - 41680962
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| |||||||||| |||||||    
T  41680926 gatggtgacttgctgcatatgtttaaatggtgatgtc 41680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 12122202 - 12122260
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12122202 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 12122260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 31455249 - 31455193
Alignment:
Q  24 gagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31455249 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 31455862 - 31455806
Alignment:
Q  24 gagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31455862 gagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31455806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 21555060 - 21555118
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  21555060 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21555118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 21557726 - 21557784
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  21557726 cagagaggatgaataagatgattaatattgatgttttagtttgatgattaaatgtgaaa 21557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 30615926 - 30615868
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  30615926 cagagaggatgaataagatgattaatattgataatttacttttatgattaaatgtgaaa 30615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 36460341 - 36460283
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  36460341 cagagaggatgaacaagatgattaataatgatgatttactttgatgattaaatgtgaaa 36460283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 24212526 - 24212481
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  24212526 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 24212481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 35852781 - 35852736
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  35852781 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 35852736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 12122325 - 12122361
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  12122325 gatggtgacttgcggcatatgtttaaatgatgatgtc 12122361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 21555183 - 21555219
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  21555183 gatggtgacttgctgcatatgtttaaatgatgttgtc 21555219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 30615804 - 30615768
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| |||||||| |||||||||    
T  30615804 gatggtgacttgctgcatatgtttaaacgatgatgtc 30615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 31455738 - 31455702
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  31455738 gatggtgacttgctgcatatgtttaaatgatgttgtc 31455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 33186273 - 33186215
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33186273 cagagaggatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 33186215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 33186150 - 33186114
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||||||||||||||||||||||    
T  33186150 gatggtgacttgctgcatttgtttaaatgatgatgtc 33186114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 13844744 - 13844685
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  13844744 cagagaggatgattaagatgatttaatattattgatttacgttgatgattaaatgtgaaa 13844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 15880855 - 15880810
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||||||| |||||| ||||||||||||||| |||||||||||||    
T  15880855 taagatgatcaatattgatgatttactttgattattaaatgtgaaa 15880810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 6359 - 6417
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6359 cagagaggatgaataagatgattaataataatgatttactttgatgattaaatgtgaaa 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 14511 - 14453
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14511 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 14453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 11085170 - 11085112
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11085170 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 30820937 - 30820995
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  30820937 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 30820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 11092899 - 11092850
Alignment:
Q  31 tgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11092899 tgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 11092850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 15213869 - 15213812
Alignment:
Q  23 agagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15213869 agagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 15213812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 36685938 - 36685989
Alignment:
Q  29 gatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36685938 gatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 36685989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 9320423 - 9320468
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  9320423 taagatgattaatattgatgatttattttgatgattaaatgtgaaa 9320468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 15439457 - 15439398
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  15439457 cagagaggatgactaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 15439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 36686054 - 36686090
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  36686054 gatggtgacttgctgcatatgtttaaatgatgttgtc 36686090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 15447681 - 15447739
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15447681 cagagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 15447739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 11913092 - 11913034
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  11913092 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 11913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 31224635 - 31224693
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31224635 cagagaggatgaataagatgattaatattgatgttttactttgatgattaaatgtgaaa 31224693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 6808291 - 6808250
Alignment:
Q  39 atgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6808291 atgattaatattgatgatttactttgatgattaaatgtgaaa 6808250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 31224758 - 31224794
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  31224758 gatggtgacttgctgcatatgtttaaatgatgttgtc 31224794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 31415452 - 31415416
Alignment:
Q  145 gatggtgacttgctgcatttgtttaaatgatgatgtc 181  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  31415452 gatggtgacttgctgcatatgtttaaatgatgttgtc 31415416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 49969963 - 49969991
Alignment:
Q  52 atgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||||||||||||||    
T  49969963 atgatttactttgatgattaaatgtgaaa 49969991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 7672240 - 7672297
Alignment:
Q  23 agagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7672240 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 7672297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 24865452 - 24865509
Alignment:
Q  23 agagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24865452 agagaggatgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 24865509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 2524418 - 2524468
Alignment:
Q  30 atgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2524418 atgaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 2524468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 22501148 - 22501102
Alignment:
Q  34 ataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22501148 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22501102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 22509082 - 22509036
Alignment:
Q  34 ataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  22509082 ataagatgattaatattgatgatttactttgatgattaaatgtgaaa 22509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 4786 - 4728
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4786 cagagaggatgaataagatgattaataatgatgatttactttgatgattaaatgtgaaa 4728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 368 - 310
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  368 cagagaggatgaataagatgattaataatgatgatttactttgatgattatatgtgaaa 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 1736 - 1679
Alignment:
Q  23 agagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1736 agagaggattaataagatgattaatattgatgatttactttgatgattaaatgtgaaa 1679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 12328538 - 12328594
Alignment:
Q  24 gagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  12328538 gagaggatgaataagatgattaatattgatgatttactttgatgattaaatttgaaa 12328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 8885555 - 8885510
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  8885555 taagatgattaatattgatgatttactttgatgattaaatgtgaaa 8885510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 51274290 - 51274327
Alignment:
Q  43 ttaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||| |||||||||||||||||||||||||||||    
T  51274290 ttaatattgatgatttactttgatgattaaatgtgaaa 51274327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 20734128 - 20734186
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  20734128 cagagaggatgaataaaatgatttatattgatgatttactttgatgattaaatgtgaaa 20734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 27851373 - 27851315
Alignment:
Q  22 cagagatgatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  27851373 cagagaggatgaataagatgatttatattgatgatttaccttgatgattaaatgtgaaa 27851315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 22421123 - 22421080
Alignment:
Q  37 agatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  22421123 agatgattaatattgatgatttactttgatgattaaatgtgaaa 22421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 34296957 - 34297008
Alignment:
Q  29 gatgaataagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  34296957 gatgaataagatgattaataatgatgatttactttgatgattagatgtgaaa 34297008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 2201277 - 2201232
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  2201277 taagatgattaatattgatgatttactttgatgattaaatatgaaa 2201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 25956537 - 25956596
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  25956537 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 25956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 11053 - 11008
Alignment:
Q  35 taagatgattaatattaatgatttactttgatgattaaatgtgaaa 80  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||    
T  11053 taagatgattaatgttgatgatttactatgatgattaaatgtgaaa 11008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 3136 - 3077
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  3136 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 3077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 43700 - 43759
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  43700 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 43759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 47620 - 47679
Alignment:
Q  22 cagagatgatgaataagatgatt-aatattaatgatttactttgatgattaaatgtgaaa 80  Q
    |||||| ||||| |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  47620 cagagaggatgattaagatgatttaatattgttgatttacgttgatgattaaatgtgaaa 47679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 6770 - 6798
Alignment:
Q  52 atgatttactttgatgattaaatgtgaaa 80  Q
    |||||||||||||||||||||||||||||    
T  6770 atgatttactttgatgattaaatgtgaaa 6798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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